Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_F08
         (498 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              26   0.25 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   3.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.4  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.8 bits (54), Expect = 0.25
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +1

Query: 19  LHQPQSSYRPDRIIDYRLSAFRRRPQCRSNGVPDQ 123
           LH  ++S +  +I+ Y  S  R++   + N +PD+
Sbjct: 164 LHMNRTSLKTSKIVSYPKSRSRKKGGLKDNLIPDK 198


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 299 MLYRGDVVPKDVNAAIAT 352
           M+Y G  V  D+NA IAT
Sbjct: 319 MMYLGTPVMPDLNALIAT 336


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 208 LCSGDHERLLR 240
           LCS D ERL+R
Sbjct: 22  LCSEDEERLVR 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,254
Number of Sequences: 438
Number of extensions: 2857
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)