Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_F08
(498 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 318 2e-87
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 318 2e-87
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 317 2e-87
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 317 2e-87
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 316 7e-87
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 316 7e-87
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 301 2e-82
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 120 5e-28
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 119 1e-27
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 117 4e-27
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 117 5e-27
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 117 5e-27
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 117 5e-27
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 116 7e-27
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 116 7e-27
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 113 6e-26
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 80 7e-16
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 79 2e-15
At1g01190.1 68414.m00032 cytochrome P450, putative similar to cy... 31 0.43
At1g50220.1 68414.m05631 hypothetical protein 30 0.75
At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein ... 28 3.0
At2g15020.1 68415.m01710 expressed protein and genefinder 28 3.0
At4g00240.1 68417.m00031 phospholipase D beta 2 / PLD beta 2 (PL... 27 9.3
At2g23550.2 68415.m02811 hydrolase, alpha/beta fold family prote... 27 9.3
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 318 bits (780), Expect = 2e-87
Identities = 141/165 (85%), Positives = 156/165 (94%)
Frame = +2
Query: 2 DIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS 181
+IERPTYTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVIS
Sbjct: 218 NIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS 277
Query: 182 AEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKT 361
AEKA+HEQLSVAEITN+ FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ TIKT
Sbjct: 278 AEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKT 337
Query: 362 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAXVQRAVCMLSNTT 496
KRTIQFVDWCPTGFK GINYQPPTVVPGGDLA VQRAVCM+SN+T
Sbjct: 338 KRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNST 382
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 318 bits (780), Expect = 2e-87
Identities = 141/165 (85%), Positives = 156/165 (94%)
Frame = +2
Query: 2 DIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS 181
+IERPTYTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVIS
Sbjct: 218 NIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS 277
Query: 182 AEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKT 361
AEKA+HEQLSVAEITN+ FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ TIKT
Sbjct: 278 AEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKT 337
Query: 362 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAXVQRAVCMLSNTT 496
KRTIQFVDWCPTGFK GINYQPPTVVPGGDLA VQRAVCM+SN+T
Sbjct: 338 KRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNST 382
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 317 bits (779), Expect = 2e-87
Identities = 141/164 (85%), Positives = 155/164 (94%)
Frame = +2
Query: 5 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISA 184
IERPTYTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISA
Sbjct: 219 IERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISA 278
Query: 185 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 364
EKA+HEQLSVAEITN+ FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ TIKTK
Sbjct: 279 EKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTK 338
Query: 365 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAXVQRAVCMLSNTT 496
RTIQFVDWCPTGFK GINYQPPTVVPGGDLA VQRAVCM+SN+T
Sbjct: 339 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNST 382
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 317 bits (779), Expect = 2e-87
Identities = 141/164 (85%), Positives = 155/164 (94%)
Frame = +2
Query: 5 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISA 184
IERPTYTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISA
Sbjct: 219 IERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISA 278
Query: 185 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 364
EKA+HEQLSVAEITN+ FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ TIKTK
Sbjct: 279 EKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTK 338
Query: 365 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAXVQRAVCMLSNTT 496
RTIQFVDWCPTGFK GINYQPPTVVPGGDLA VQRAVCM+SN+T
Sbjct: 339 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNST 382
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 316 bits (775), Expect = 7e-87
Identities = 141/165 (85%), Positives = 152/165 (92%)
Frame = +2
Query: 2 DIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS 181
DIERPTYTNLNRLI QI+SS+T SLRFDGA+NVD+TEFQTNLVPYPRIHF L +YAPVIS
Sbjct: 218 DIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVIS 277
Query: 182 AEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKT 361
A KAYHEQLSV EITNA FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ TIKT
Sbjct: 278 AAKAYHEQLSVPEITNAVFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKT 337
Query: 362 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAXVQRAVCMLSNTT 496
KRT+QFVDWCPTGFK GINYQPPTVVPGGDLA VQRAVCM+SN T
Sbjct: 338 KRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNT 382
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 316 bits (775), Expect = 7e-87
Identities = 141/165 (85%), Positives = 152/165 (92%)
Frame = +2
Query: 2 DIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS 181
DIERPTYTNLNRLI QI+SS+T SLRFDGA+NVD+TEFQTNLVPYPRIHF L +YAPVIS
Sbjct: 218 DIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVIS 277
Query: 182 AEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKT 361
A KAYHEQLSV EITNA FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ TIKT
Sbjct: 278 AAKAYHEQLSVPEITNAVFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKT 337
Query: 362 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAXVQRAVCMLSNTT 496
KRT+QFVDWCPTGFK GINYQPPTVVPGGDLA VQRAVCM+SN T
Sbjct: 338 KRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNT 382
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 301 bits (739), Expect = 2e-82
Identities = 133/165 (80%), Positives = 147/165 (89%)
Frame = +2
Query: 2 DIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS 181
DIERPTY+NLNRLI Q +SS+T SLRFDGA+NVD+TEFQTNLVPYPRIHF L +YAPVIS
Sbjct: 218 DIERPTYSNLNRLISQTISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVIS 277
Query: 182 AEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKT 361
+ KAYHEQ SV EIT + FEP+N M KCDPRHGKYMACC++YRGDVVPKDVN A+A IK
Sbjct: 278 SAKAYHEQFSVPEITTSVFEPSNMMAKCDPRHGKYMACCLMYRGDVVPKDVNTAVAAIKA 337
Query: 362 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAXVQRAVCMLSNTT 496
KRTIQFVDWCPTGFK GINYQPP+VVPGGDLA VQRAVCM+SN T
Sbjct: 338 KRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNT 382
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 120 bits (289), Expect = 5e-28
Identities = 53/143 (37%), Positives = 83/143 (58%)
Frame = +2
Query: 5 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISA 184
+ P++ +LN LI +S +T SLRF G LN DL + NL+P+PR+HF +V +AP+ S
Sbjct: 218 LSTPSFGDLNHLISATMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR 277
Query: 185 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 364
+ L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ I ++ K
Sbjct: 278 GSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQILNVQNK 337
Query: 365 RTIQFVDWCPTGFKVGINYQPPT 433
+ FV+W P K + PPT
Sbjct: 338 NSSYFVEWIPNNVKSSVCDIPPT 360
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 119 bits (286), Expect = 1e-27
Identities = 53/142 (37%), Positives = 82/142 (57%)
Frame = +2
Query: 5 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISA 184
+ P++ +LN LI +S +T SLRF G LN DL + NL+P+PR+HF +V +AP+ S
Sbjct: 218 LSTPSFGDLNHLISATMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR 277
Query: 185 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 364
+ L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ I I+ K
Sbjct: 278 GSQQYISLTVPELTQQMWDSKNMMCAADPRHGRYLTASAIFRGQMSTKEVDEQILNIQNK 337
Query: 365 RTIQFVDWCPTGFKVGINYQPP 430
+ FV+W P K + PP
Sbjct: 338 NSSYFVEWIPNNVKSSVCDIPP 359
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 117 bits (282), Expect = 4e-27
Identities = 51/143 (35%), Positives = 82/143 (57%)
Frame = +2
Query: 5 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISA 184
+ P++ +LN LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S
Sbjct: 217 LSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR 276
Query: 185 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 364
+ L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K
Sbjct: 277 GSQQYRNLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNK 336
Query: 365 RTIQFVDWCPTGFKVGINYQPPT 433
+ FV+W P K + PPT
Sbjct: 337 NSSYFVEWIPNNVKSTVCDIPPT 359
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 117 bits (281), Expect = 5e-27
Identities = 51/140 (36%), Positives = 81/140 (57%)
Frame = +2
Query: 14 PTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKA 193
P++ +LN LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S
Sbjct: 220 PSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQ 279
Query: 194 YHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTI 373
+ L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K +
Sbjct: 280 QYRSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSS 339
Query: 374 QFVDWCPTGFKVGINYQPPT 433
FV+W P K + PPT
Sbjct: 340 YFVEWIPNNVKSTVCDIPPT 359
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 117 bits (281), Expect = 5e-27
Identities = 51/140 (36%), Positives = 81/140 (57%)
Frame = +2
Query: 14 PTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKA 193
P++ +LN LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S
Sbjct: 220 PSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQ 279
Query: 194 YHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTI 373
+ L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K +
Sbjct: 280 QYRSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSS 339
Query: 374 QFVDWCPTGFKVGINYQPPT 433
FV+W P K + PPT
Sbjct: 340 YFVEWIPNNVKSTVCDIPPT 359
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 117 bits (281), Expect = 5e-27
Identities = 52/143 (36%), Positives = 81/143 (56%)
Frame = +2
Query: 5 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISA 184
+ PT+ +LN LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S
Sbjct: 217 LANPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR 276
Query: 185 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 364
+ LSV E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K
Sbjct: 277 GSQQYSALSVPELTQQMWDAKNMMCAADPRHGRYLTASAVFRGKMSTKEVDEQMMNVQNK 336
Query: 365 RTIQFVDWCPTGFKVGINYQPPT 433
+ FV+W P K + PT
Sbjct: 337 NSSYFVEWIPNNVKSSVCDIAPT 359
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 116 bits (280), Expect = 7e-27
Identities = 51/137 (37%), Positives = 79/137 (57%)
Frame = +2
Query: 5 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISA 184
+ PT+ +LN LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S
Sbjct: 217 LANPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR 276
Query: 185 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 364
+ LSV E+T ++ N M DPRHG+Y+ ++RG + K+V+ + I+ K
Sbjct: 277 GSQQYSALSVPELTQQMWDAKNMMCAADPRHGRYLTASAVFRGKLSTKEVDEQMMNIQNK 336
Query: 365 RTIQFVDWCPTGFKVGI 415
+ FV+W P K +
Sbjct: 337 NSSYFVEWIPNNVKSSV 353
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 116 bits (280), Expect = 7e-27
Identities = 51/140 (36%), Positives = 81/140 (57%)
Frame = +2
Query: 14 PTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKA 193
P++ +LN LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S
Sbjct: 220 PSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQ 279
Query: 194 YHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTI 373
+ L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K +
Sbjct: 280 QYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSS 339
Query: 374 QFVDWCPTGFKVGINYQPPT 433
FV+W P K + PPT
Sbjct: 340 YFVEWIPNNVKSTVCDIPPT 359
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 113 bits (272), Expect = 6e-26
Identities = 48/134 (35%), Positives = 78/134 (58%)
Frame = +2
Query: 14 PTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKA 193
P++ +LN LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S
Sbjct: 220 PSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQ 279
Query: 194 YHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTI 373
+ L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K +
Sbjct: 280 QYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSS 339
Query: 374 QFVDWCPTGFKVGI 415
FV+W P K +
Sbjct: 340 YFVEWIPNNVKSSV 353
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 80.2 bits (189), Expect = 7e-16
Identities = 39/150 (26%), Positives = 77/150 (51%), Gaps = 6/150 (4%)
Frame = +2
Query: 5 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPV-IS 181
+ PT+ N L+ ++S+ T +LR+ G +N DL +L+P PR HF + Y P+ +
Sbjct: 220 LTNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVE 279
Query: 182 AEKAYHEQLSVAEITNACFEPANQMVKCDPRH-----GKYMACCMLYRGDVVPKDVNAAI 346
+ + +V ++ + N MV R+ KY++ + +G+V P V+ ++
Sbjct: 280 RQANVIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQVHESL 339
Query: 347 ATIKTKRTIQFVDWCPTGFKVGINYQPPTV 436
I+ ++ + F+DW P +V ++ + P V
Sbjct: 340 QRIRERKLVNFIDWGPASIQVALSKKSPYV 369
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 78.6 bits (185), Expect = 2e-15
Identities = 38/150 (25%), Positives = 77/150 (51%), Gaps = 6/150 (4%)
Frame = +2
Query: 5 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPV-IS 181
+ PT+ N L+ ++S+ T +LR+ G +N DL +L+P PR HF + Y P+ +
Sbjct: 220 LTNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVE 279
Query: 182 AEKAYHEQLSVAEITNACFEPANQMVKCDPRH-----GKYMACCMLYRGDVVPKDVNAAI 346
+ + +V ++ + N MV R+ KY++ + +G+V P V+ ++
Sbjct: 280 RQANVIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQVHESL 339
Query: 347 ATIKTKRTIQFVDWCPTGFKVGINYQPPTV 436
I+ ++ + F++W P +V ++ + P V
Sbjct: 340 QRIRERKLVNFIEWGPASIQVALSKKSPYV 369
>At1g01190.1 68414.m00032 cytochrome P450, putative similar to
cytochrome P450 SP:O48927 from [Glycine max]
Length = 535
Score = 31.1 bits (67), Expect = 0.43
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +2
Query: 92 LNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNA 232
+++D NL+P PR FPLV + S+ A+ SVAE++NA
Sbjct: 62 ISLDYNRKYKNLIPGPR-GFPLVGSMSLRSSHVAHQRIASVAEMSNA 107
>At1g50220.1 68414.m05631 hypothetical protein
Length = 203
Score = 30.3 bits (65), Expect = 0.75
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = -3
Query: 379 ELDGALGLDGSDSRVDVLGHDVTAVQHAAGHVFAVTRVTFHHLVGGLEASVRDLRYRELL 200
ELDGA+ + + ++ D++G+ + + VT L G E V D+ +L
Sbjct: 84 ELDGAMIISKTLTKSDIVGNVALPKAQVMSVLTRMNGVTDEGLDNGFEVQVHDIMEDDLY 143
Query: 199 VVSLLGRDD 173
V+L DD
Sbjct: 144 TVTLKRIDD 152
>At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 587
Score = 28.3 bits (60), Expect = 3.0
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +2
Query: 308 RGDVVPKDVNAAIATIKTKRTIQFVDWCPT-GFKVGINYQPPTVVPGGD 451
+G V D A T TK+ + DW P+ FK PP ++P D
Sbjct: 308 QGVAVSSDKGAEANTTSTKKKVSSDDWEPSEPFKASFTI-PPYILPSSD 355
>At2g15020.1 68415.m01710 expressed protein and genefinder
Length = 526
Score = 28.3 bits (60), Expect = 3.0
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +2
Query: 86 GALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVK 262
G N+ L +F ++L+P + F T A + K Y LS+ N+ E N++VK
Sbjct: 212 GLGNLGLKQFSSSLMPRHSLGFSYATEAHGLWILKGYFPILSMNVTNNSSNEVHNKIVK 270
>At4g00240.1 68417.m00031 phospholipase D beta 2 / PLD beta 2
(PLDBETA2) / PLDdelta1 identical to SP|O23078
Phospholipase D beta 2 (EC 3.1.4.4) (AtPLDbeta2) (PLD
beta 2) (PLDdelta1) [Arabidopsis thaliana]; contains
Pfam profiles: PF00614 phospholipase D.active site
motif, PF00168 C2 domain
Length = 927
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = -3
Query: 439 HHGRGLVVDTDLETGRTPVHELDGALGLDGSDSRVDVLGH 320
HH + L+VD D R + G GLD D R D H
Sbjct: 443 HHQKNLIVDADAGGNRRKIVAFVG--GLDLCDGRYDTPQH 480
>At2g23550.2 68415.m02811 hydrolase, alpha/beta fold family protein
similar to ethylene-induced esterase [Citrus sinensis]
GI:14279437, polyneuridine aldehyde esterase [Rauvolfia
serpentina] GI:6651393; contains Pfam profile PF00561:
hydrolase, alpha/beta fold family
Length = 243
Score = 26.6 bits (56), Expect = 9.3
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -3
Query: 370 GALGLDGSDSRVDVLGHDVTAVQHAAGHVFAVTRVTFHHLVGGLEASV 227
GA D ++++V GH VTAV AA V + H +GG+ A++
Sbjct: 25 GAWTWDKVKTQLEVAGHCVTAVDLAASDDGKV--IVVAHSMGGISAAL 70
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,905,312
Number of Sequences: 28952
Number of extensions: 228412
Number of successful extensions: 620
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -