Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_F06
         (601 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.71 
SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_1780| Best HMM Match : Retinin_C (HMM E-Value=7.1)                  29   2.9  
SB_56617| Best HMM Match : RVT_1 (HMM E-Value=0.04)                    29   3.8  
SB_9756| Best HMM Match : Cadherin (HMM E-Value=0)                     29   3.8  
SB_26795| Best HMM Match : Exo_endo_phos (HMM E-Value=6.3e-10)         28   6.6  
SB_15881| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_10682| Best HMM Match : Pkinase (HMM E-Value=2.5e-07)               27   8.8  

>SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 642

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 60  TRVSLTPLCNNTAVSITSNDSPPFNNAD 143
           T+ S TP+C + A   T+N SP  N++D
Sbjct: 570 TQSSATPMCQSGATDTTNNQSPAVNSSD 597


>SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 979

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 217 KRNAEVTSSAPS*INYSSKDNQTSSNTLTVSGTDP 321
           + N +VT   P  ++YSS D+    N     GT+P
Sbjct: 820 RHNDDVTDKKPRLVDYSSADSSDHDNAADNKGTEP 854


>SB_1780| Best HMM Match : Retinin_C (HMM E-Value=7.1)
          Length = 317

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 12  DDDKMILITVVLSA-LVTRVSLTPLCNNTAVSITSNDSP 125
           DDD   L  ++  A L    S TPLC + + +I   DSP
Sbjct: 61  DDDPASLANIINEAFLAPMASFTPLCADASPTIPPTDSP 99


>SB_56617| Best HMM Match : RVT_1 (HMM E-Value=0.04)
          Length = 447

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 12  DDDKMILITVVLSALVTRV-SLTPLCNNTAVSITSNDSP 125
           DDD   L  ++  A ++ + S TPLC + + +I   DSP
Sbjct: 111 DDDPASLANIINEAFLSPMASFTPLCADASPTIPPTDSP 149


>SB_9756| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 608

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = +3

Query: 54  LVTRVSLTPLCNNTAVSITSNDSPPFNNADPVMQL-YNSVIVSDYKAAVKTTFQLEKECR 230
           + T    +P   +  V IT ND    N+  PV +  Y  V+VS+Y    +T  +L     
Sbjct: 356 IATDNGTSPRSAHARVHITVND---VNDNRPVFEPPYYQVMVSEYAPVGQTILRLTVSDN 412

Query: 231 SDVISSVVNKLLLEGQPN 284
               +S +N  ++ G PN
Sbjct: 413 DTAENSQLNLRVVSGDPN 430


>SB_26795| Best HMM Match : Exo_endo_phos (HMM E-Value=6.3e-10)
          Length = 609

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 213 LEKECRSDVISSVVNKLLLE-GQPNVVEYAYSLWYRSGEDIVKVYFPIE 356
           L    RSD+    +  L++E  +PN   +  + WYR  +  VK++   E
Sbjct: 245 LSHTLRSDLADPYLEMLIIEIKKPNTKPFLIATWYRPPKSSVKLFESFE 293


>SB_15881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 796

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
 Frame = +3

Query: 12  DDDKMILITVVLSALVTRVSL-TPLCNNTAVSITSNDSPPFNNADPVMQL--YNSVIVSD 182
           DDD   L  ++  A +  ++  TPLC + + +I   DSP       + +L   N+   + 
Sbjct: 290 DDDPASLANIINEAFLAPMAFFTPLCADASPTIPPTDSPSVTELGVLKKLSSLNTTKATR 349

Query: 183 YKAAVKTTFQLEKECRSDVISSVVNKLLLEGQ 278
                    +   +  +  ++S++N    EG+
Sbjct: 350 PDGVPGWLLKENADLLAPAVTSIINTSFAEGR 381


>SB_10682| Best HMM Match : Pkinase (HMM E-Value=2.5e-07)
          Length = 165

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +3

Query: 219 KECRSDVISSVVNKLLLEGQPNVVEYAYSLWYRSGEDIVKVYFPIEFRLLFNEDP 383
           K C   +  SV N     G P++ +Y  + WYR+ E ++       F  +F  +P
Sbjct: 96  KICDFGLARSVSNITQEAGDPSLTDYVATRWYRAPEILLASPRKATFSWIFYIEP 150


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,119,282
Number of Sequences: 59808
Number of extensions: 296351
Number of successful extensions: 607
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)