Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_F06
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          23   1.7  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.0  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   4.0  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   4.0  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +3

Query: 477 TKTGPRVSWKLYPIW--YKNKVYFKILNPYHT 566
           +K G      L  +W  YK  VYF++L+P  T
Sbjct: 57  SKAGIHRKKVLLSVWWDYKGIVYFELLSPNRT 88


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = +3

Query: 270 EGQPNVVEYAYSLWYRSGEDIVKVYFP 350
           EG+ +V++ +++L   +G  +++VY P
Sbjct: 228 EGEFSVLQVSFNLQRHTGYFLIQVYVP 254


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 486 GPRVSWKLYPIWYKNKVYFKILNPYH 563
           G  +S+ + PI++ + V   +LNP H
Sbjct: 449 GALLSYFIEPIYFHSIVLGSLLNPSH 474


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = +3

Query: 477 TKTGPRVSWKLYPIW--YKNKVYFKILNPYHT 566
           +K G      L  +W  YK  VYF++L P  T
Sbjct: 179 SKAGIHRKKVLLSVWWDYKGIVYFELLPPNRT 210


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,943
Number of Sequences: 438
Number of extensions: 2938
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)