Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_F05
         (484 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    31   0.12 
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    27   1.1  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    25   4.5  
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces...    25   7.9  

>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 30.7 bits (66), Expect = 0.12
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 257 AGIASQVDTVWYATNVNIRVSVHEIGKAGGCARSSNTI 144
           A  A++  T+W   N+ I   +HE+G   GC    + I
Sbjct: 281 ANDANESSTIWECANIGIGAMLHELGHTLGCPHQPDGI 318


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -3

Query: 443 QYIIMGLTM*RIRRGFVRRIDITL 372
           +++I+GL    IRRG + +IDITL
Sbjct: 218 EHLILGLVWQIIRRGLLGKIDITL 241


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +3

Query: 210 YIGGIPDRINL---RGYPGLIGCIEQVELMGTSRGL 308
           Y+ G P  I+L   R Y     C++Q+EL+GT R L
Sbjct: 462 YVSGCPTEISLPILRKYK----CLDQMELLGTIRKL 493


>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -2

Query: 132 KLYCLRVVLRLSDVFHRRLLEY 67
           K Y  R VLRL D FHR   +Y
Sbjct: 89  KFYSERGVLRLLDFFHRPWEDY 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,917,537
Number of Sequences: 5004
Number of extensions: 37186
Number of successful extensions: 100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)