Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_F05
(484 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1100 + 26077776-26077893,26078208-26078434 35 0.039
02_05_0029 - 25194827-25195095,25195129-25197970 29 1.5
11_01_0628 + 5052042-5052863,5053232-5053475,5054136-5054155 29 2.0
06_01_0211 + 1604799-1605037,1605420-1605575,1605972-1606043,160... 28 3.4
10_08_0799 - 20650799-20650947,20651022-20651114,20651906-206519... 27 6.0
07_03_1608 - 28125301-28126063,28127030-28127139,28127222-281277... 27 6.0
03_05_0063 - 20375038-20375257,20375338-20375426,20375542-203757... 27 6.0
02_02_0008 + 6061508-6061624,6062468-6062566,6062636-6063039,606... 27 6.0
11_02_0071 - 8009785-8010012,8010456-8010974,8011429-8011611 27 7.9
07_03_0897 - 22389116-22389600,22389611-22389728 27 7.9
>12_02_1100 + 26077776-26077893,26078208-26078434
Length = 114
Score = 34.7 bits (76), Expect = 0.039
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = -3
Query: 341 IPTGNSDLSKVQPSASAHKLHLLYATDEAGIASQVDTVWYATNVNIRVSV-HEIGKAGGC 165
+PT +SD+ K P AS++ +Y +A +S V T W +V + V+V + AG C
Sbjct: 5 LPTTSSDICKTSPMASSN----IYKVQDANNSSFVFTPWLCMHVCLLVTVLRLVIPAGNC 60
Query: 164 ARSSNTIHR 138
+S+ + R
Sbjct: 61 QAASSFLSR 69
>02_05_0029 - 25194827-25195095,25195129-25197970
Length = 1036
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 212 HWWHTRPYQPARLSRPHRLHRASGA 286
HW H +P P+RLS RL A GA
Sbjct: 848 HWLHEKPDGPSRLSWQTRLQIAKGA 872
>11_01_0628 + 5052042-5052863,5053232-5053475,5054136-5054155
Length = 361
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 111 LHEDNTVSLSVDSVTRTGTTTGLSNLMNAD 200
+H N VSL +D++TRT L +L+ AD
Sbjct: 205 VHATNLVSLHLDAITRTPVLERLPSLVKAD 234
>06_01_0211 +
1604799-1605037,1605420-1605575,1605972-1606043,
1606325-1606396,1606608-1606679,1606777-1606848,
1606936-1607007,1607092-1607160,1607278-1607349,
1607630-1607701,1607786-1607857,1607940-1608011,
1608100-1608171,1608286-1608357,1608449-1608520,
1608633-1608704,1608801-1608872,1608962-1609033,
1609120-1609191,1609283-1609353,1609439-1609570,
1609676-1610014,1610097-1610467,1610599-1610928,
1611115-1611150
Length = 964
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 78 NDGERHQIIAKLHEDNTVSLSVDS-VTRTGTTTGL 179
N+ HQ+I +DNTV +VDS V+ T T GL
Sbjct: 836 NESNLHQLILSKADDNTVMEAVDSEVSVTCTDMGL 870
>10_08_0799 -
20650799-20650947,20651022-20651114,20651906-20651934,
20652039-20652097,20652170-20652283,20652374-20652534,
20652544-20652663,20652741-20653469,20654980-20655244
Length = 572
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 159 TGTTTGLSNLMNADSNIYIGGIPDRINL 242
TG T GL L +AD +GG PD +L
Sbjct: 373 TGATGGLGGLGSADLGSLLGGSPDSSSL 400
>07_03_1608 -
28125301-28126063,28127030-28127139,28127222-28127716,
28127797-28128000
Length = 523
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +2
Query: 206 YLHWWHTRPYQPARLSRPHRLHRASGAYGH*PRAEPWTGRCC 331
++HWWH +PA +++ G G+ P A+ + R C
Sbjct: 360 FMHWWHGARSRPAEAVA--GFYKSGGKNGYSPVAKMFARRGC 399
>03_05_0063 -
20375038-20375257,20375338-20375426,20375542-20375730,
20377507-20378175,20379597-20379806
Length = 458
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 84 GERHQIIAKLHEDNTVSLSVDSVTRTGTTTGLS 182
GE+H + + +DN+V VD T GT T S
Sbjct: 77 GEKHMRVTFVTDDNSVPSVVDYGTEAGTYTSTS 109
>02_02_0008 +
6061508-6061624,6062468-6062566,6062636-6063039,
6064218-6064278,6064413-6064466,6064786-6064854,
6064993-6065058,6065162-6065230,6065448-6065537
Length = 342
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +3
Query: 177 LSNLMNADSNIYIGGIPDRIN---LRGYPGLIGCIEQVELMGTSR 302
+S +N ++++Y+GG+P N LR G G I V+++ R
Sbjct: 1 MSAAVNEETSVYVGGLPYEANEDMLRDAFGRFGTIVSVKVINDQR 45
>11_02_0071 - 8009785-8010012,8010456-8010974,8011429-8011611
Length = 309
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +3
Query: 36 GSGTSTITIENIRVNDGERHQIIA---KLHEDNTVSLSVDSVTRTGTTTGL 179
G GTS + I NIR G I + + E +++V+S + GT GL
Sbjct: 138 GPGTSGVAIRNIRCGPGHGISIGSLGGRAGEGEVRNVTVESASLAGTQNGL 188
>07_03_0897 - 22389116-22389600,22389611-22389728
Length = 200
Score = 27.1 bits (57), Expect = 7.9
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = -3
Query: 302 SASAHKLHLLYATDEAGIASQVDTV-WYATNVNIR--VSVHEIGKAGGCARSSNTIHRQ* 132
SA+ L LL A+ A+ V + W+++ + I V+V IG A + SSN IHRQ
Sbjct: 96 SAAQGLLPLLRASPPRFPAATVVALGWWSSYLYIATDVAVQAIGPATSPSTSSNMIHRQR 155
Query: 131 NCIVFV*FCDYLMSFT 84
I F DY F+
Sbjct: 156 RRI----FLDYTSLFS 167
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,445,517
Number of Sequences: 37544
Number of extensions: 245039
Number of successful extensions: 632
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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