Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_F05
         (484 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02050.1 68418.m00126 mitochondrial glycoprotein family prote...    28   3.8  
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ...    28   3.8  
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ...    28   3.8  
At5g17340.1 68418.m02031 expressed protein weak similarity to M3...    27   5.0  
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ...    27   5.0  
At5g10340.1 68418.m01199 F-box protein-related / SLF-related con...    27   6.6  
At5g47420.1 68418.m05843 expressed protein contains Pfam domain,...    27   8.8  
At1g63570.1 68414.m07186 receptor-like protein kinase-related co...    27   8.8  

>At5g02050.1 68418.m00126 mitochondrial glycoprotein family protein
           / MAM33 family protein low similarity to SUAPRGA1
           [Emericella nidulans] GI:6562379; contains Pfam profile
           PF02330: Mitochondrial glycoprotein
          Length = 267

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 78  NDGERHQIIAKLHEDNTVSLSVDSV 152
           N GER  ++ +  ED T+ + VDSV
Sbjct: 110 NSGERTVLLTRKFEDETIQVEVDSV 134


>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
           protein
          Length = 830

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +3

Query: 177 LSNLMNADSNIYIGGIPDRINLRGYPGLIGCIEQVELMGTSRGLNL 314
           L  L+  D N  + G+ D +N  G P  +  +E+ ++  T  G+ L
Sbjct: 90  LEILLPEDENELLPGLIDELNFTGLPDELDDLEECDVFCTGGGMEL 135


>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
           protein
          Length = 843

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +3

Query: 177 LSNLMNADSNIYIGGIPDRINLRGYPGLIGCIEQVELMGTSRGLNL 314
           L  L+  D N  + G+ D +N  G P  +  +E+ ++  T  G+ L
Sbjct: 103 LEILLPEDENELLPGLIDELNFTGLPDELDDLEECDVFCTGGGMEL 148


>At5g17340.1 68418.m02031 expressed protein weak similarity to M3.4
           protein [Brassica napus] GI:4574746
          Length = 160

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 209 LHWWHTRPYQPARLSRPH 262
           L WWH  P+ P    +PH
Sbjct: 37  LEWWHYNPFYPHFYPKPH 54


>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
           protein heterogeneous nuclear ribonucleoprotein R, Homo
           sapiens, PIR:T02673; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 471

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = +3

Query: 201 SNIYIGGIPDRI---NLRGYPGLIGCIEQVELM 290
           S +Y+GGIP      +L+G+ G IG + +V +M
Sbjct: 92  SEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIM 124


>At5g10340.1 68418.m01199 F-box protein-related / SLF-related
           contains weak hit to Pfam  Pfam PF00646: F-box domain
           and to TIGRFAM TIGR01640 : F-box protein interaction
           domain; weakly similar to  self-incompatibility (S-)
           locus F-box (GI:29420811) [Prunus mume]
          Length = 445

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +3

Query: 81  DGERHQIIAKLHEDNTVSLSVDSVTRTGTTTGLSNLMNADSNIYI 215
           DG  H   A  HE  T+ LS+D  + T      +  +N     YI
Sbjct: 292 DGSLHWFTALSHEGETMVLSLDLHSETFQVISKAPFLNVSDEYYI 336


>At5g47420.1 68418.m05843 expressed protein contains Pfam domain,
           PF01987: Protein of unknown function
          Length = 282

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 3   ERGVVVLDWDFGSGTSTITIENIRVNDG 86
           E+ V VL W  G   S++ + N   NDG
Sbjct: 68  EQEVGVLQWILGKSVSSVVLRNTGQNDG 95


>At1g63570.1 68414.m07186 receptor-like protein kinase-related
           contains Pfam profile: PF01657 Domain of unknown
           function DUF26; similar to receptor-like protein kinase
           4 (GI:13506745) [Arabidopsis thaliana]
          Length = 284

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 145 IVLLERAQPPAFPIS*TLTLIFTLVAYQTVSTCEAIPASSV 267
           +V + +  P   P + T+ L F   AY TVSTC  +P+S++
Sbjct: 192 LVSMIQCSPDLDPSNCTICLRF---AYATVSTCCGVPSSAL 229


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,914,392
Number of Sequences: 28952
Number of extensions: 190440
Number of successful extensions: 460
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)