Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_F04
         (609 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)...   191   3e-49
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)...   191   3e-49
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)      186   1e-47
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con...    40   0.001
At3g50610.1 68416.m05534 hypothetical protein                          31   0.45 
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain...    28   4.2  
At4g22580.1 68417.m03258 exostosin family protein contains Pfam ...    28   5.6  
At3g21340.1 68416.m02695 leucine-rich repeat protein kinase, put...    28   5.6  
At4g18880.1 68417.m02784 heat shock transcription factor 21 (HSF...    27   7.4  
At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal hydrolase-r...    27   9.7  
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put...    27   9.7  

>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
           similar to 60S acidic ribosomal protein P0 GI:2088654
           [Arabidopsis thaliana]
          Length = 323

 Score =  191 bits (466), Expect = 3e-49
 Identities = 93/172 (54%), Positives = 125/172 (72%), Gaps = 2/172 (1%)
 Frame = +1

Query: 61  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 240
           M +  KA  K  Y  K+ QL+DEY +  +V ADNVGS Q+Q IR  LRG S+VLMGKNTM
Sbjct: 1   MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60

Query: 241 MRKAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAP 414
           M+++++ H E   N A+  LLP ++GNVG +FT+GDL +V +++ + KV APAR G +AP
Sbjct: 61  MKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120

Query: 415 LSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGAS 570
           + VV+   NTGL P +TSFFQ L+IPTKI+KGT+EII  V ++K GDKVG+S
Sbjct: 121 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSS 172


>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
           similar to putative 60S acidic ribosomal protein P0
           GB:P50346 [Glycine max]
          Length = 320

 Score =  191 bits (466), Expect = 3e-49
 Identities = 93/172 (54%), Positives = 125/172 (72%), Gaps = 2/172 (1%)
 Frame = +1

Query: 61  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 240
           M +  KA  K  Y  K+ QL+DEY +  +V ADNVGS Q+Q IR  LRG S+VLMGKNTM
Sbjct: 1   MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60

Query: 241 MRKAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAP 414
           M+++++ H E   N A+  LLP ++GNVG +FT+GDL +V +++ + KV APAR G +AP
Sbjct: 61  MKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120

Query: 415 LSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGAS 570
           + VV+   NTGL P +TSFFQ L+IPTKI+KGT+EII  V ++K GDKVG+S
Sbjct: 121 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSS 172


>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 
          Length = 317

 Score =  186 bits (453), Expect = 1e-47
 Identities = 91/167 (54%), Positives = 122/167 (73%), Gaps = 2/167 (1%)
 Frame = +1

Query: 76  KATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAI 255
           KA  K  Y  K+ QLL+EY +  +V ADNVGS Q+Q IR  LRG S+VLMGKNTMM++++
Sbjct: 7   KAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSV 66

Query: 256 KDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSVVI 429
           + H +   N A   LLP ++GNVG +FT+GDL +V +++ + KV APAR G +AP+ VV+
Sbjct: 67  RIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVV 126

Query: 430 PAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGAS 570
              NTGL P +TSFFQ L+IPTKI+KGT+EII  V ++K GDKVG+S
Sbjct: 127 QPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSS 173


>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
           contains similarity to 60S acidic ribosomal protein
           GI:5815233 from [Homo sapiens]
          Length = 235

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 34/171 (19%), Positives = 76/171 (44%), Gaps = 3/171 (1%)
 Frame = +1

Query: 58  KMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNT 237
           K GRE K    +     I + +++Y   ++   +N+ + + ++ R   R +    +G N 
Sbjct: 17  KKGREHKECIVNG----IREAVEKYSSVYVFSFENMRNIKFKEFRQQFRHNGKFFLGSNK 72

Query: 238 MMRKAIKDHLETN--PALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIA 411
           +M+ A+    E      + K+   ++G+ G + T     +V       +    +R G+IA
Sbjct: 73  VMQVALGRSAEDELRSGIYKVSKLLRGDTGLLVTDMPKEEVESLFNAYEDSDFSRTGSIA 132

Query: 412 PLSVVIPAHNTG-LGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKV 561
             +V +          E     + L +P +++KGT+E++ D  + + G ++
Sbjct: 133 VETVELKEGPLEQFTHEMEPLLRKLEMPVRLNKGTVELVADFVVCEEGKQL 183


>At3g50610.1 68416.m05534 hypothetical protein
          Length = 229

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +1

Query: 259 DHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRD-KLLENKVQAPARPGAIAPLSVVIPA 435
           D + T+P     + H KGNV     + D       KLL+  VQ   + G+    +   P 
Sbjct: 31  DFVPTSPGNSPGVGHKKGNVNVEGFQDDFKPTEGRKLLKTNVQDHFKTGSTDDFAPTSPG 90

Query: 436 HNTGLGPEK 462
           H+ G+G +K
Sbjct: 91  HSPGVGHKK 99


>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
           protein similar to Sin3 protein [Yarrowia lipolytica]
           GI:18076824; contains Pfam profile PF02671: Paired
           amphipathic helix repeat
          Length = 1173

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +1

Query: 178 MQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPALEKLLPHIKGNVGFV 327
           +++I++  +G+  +L+G NT + K  K  L       K+    K  +GFV
Sbjct: 124 IERIKVLFKGYRDLLLGFNTFLPKGYKITLLPEEEKPKIRVDFKDAIGFV 173


>At4g22580.1 68417.m03258 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 435

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 441 HWPWS*EDFFLPGSFHPH 494
           +WPW  +    P SFHPH
Sbjct: 213 YWPWQEQAVPYPTSFHPH 230


>At3g21340.1 68416.m02695 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 880

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +1

Query: 238 MMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLL 369
           ++ + I + L  N + EK  PHI   VG + T+GD+ ++ D  L
Sbjct: 764 VLLEIITNQLVINQSREK--PHIAEWVGLMLTKGDIQNIMDPKL 805


>At4g18880.1 68417.m02784 heat shock transcription factor 21 (HSF21)
           identical to heat shock transcription factor 21
           [Arabidopsis thaliana] GI:3399765; contains Pfam
           profile: PF00447 HSF-type DNA-binding domain
          Length = 401

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 29  FSEVPTSLNPRWVGRTRLPGSPITSLKSSNCWTNTQNVS 145
           FSE P S   R V   R        +++  CW N++NV+
Sbjct: 348 FSENPGSTEQREVQLERKDDKDKAGVRTEKCWWNSRNVN 386


>At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1132

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 296 FLTSRE-MLALSSPVEILLMCVINCWRTKSKP 388
           FLTS+E  L++SS    +++ V+N WR    P
Sbjct: 897 FLTSQEEFLSMSSDAAKVVVAVLNLWRCWKNP 928


>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 890

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 298 PHIKGNVGFVFTRGDLVDVRDKLL 369
           PHI   VGF+ T+GD+  + D  L
Sbjct: 792 PHINDWVGFMLTKGDIKSIVDPKL 815


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,811,442
Number of Sequences: 28952
Number of extensions: 328968
Number of successful extensions: 952
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)