Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_F02
         (550 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g29965.1 68414.m03664 60S ribosomal protein L18A  (RPL18aA) JRW    188   2e-48
At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)         188   2e-48
At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC) si...   183   8e-47
At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containi...    32   0.22 
At4g02400.1 68417.m00324 U3 ribonucleoprotein (Utp) family prote...    30   0.89 
At2g35200.1 68415.m04317 expressed protein                             30   0.89 
At1g26870.1 68414.m03277 no apical meristem (NAM) family protein...    29   1.5  
At1g68740.1 68414.m07857 EXS family protein / ERD1/XPR1/SYG1 fam...    28   3.6  
At5g49770.1 68418.m06164 leucine-rich repeat transmembrane prote...    28   4.7  
At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like fami...    27   6.2  
At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family prote...    27   8.3  
At5g04700.1 68418.m00478 hypothetical protein                          27   8.3  
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta...    27   8.3  
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta...    27   8.3  
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta...    27   8.3  

>At1g29965.1 68414.m03664 60S ribosomal protein L18A  (RPL18aA) JRW
          Length = 178

 Score =  188 bits (459), Expect = 2e-48
 Identities = 84/172 (48%), Positives = 121/172 (70%), Gaps = 3/172 (1%)
 Frame = +3

Query: 24  LKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKE 203
           L +Y+V+GR LP+E + +P +Y+M++++ + ++AKS+FWY+LR+ KK KK+ G++++I E
Sbjct: 6   LHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQMLAINE 65

Query: 204 IPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQI 383
           I EK+P  IKNFGIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R   IQI
Sbjct: 66  IFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQI 125

Query: 384 IKVEVIKAAACRRPQVKQFHTSKIGFPL---PKRVHQYKRLNTFAYKRPSTY 530
           IK   + A+ C+R   KQFH SKI FPL     R    K   TF   +P+ +
Sbjct: 126 IKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLF 177


>At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)
          Length = 178

 Score =  188 bits (458), Expect = 2e-48
 Identities = 80/146 (54%), Positives = 111/146 (76%)
 Frame = +3

Query: 30  EYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKEIP 209
           +Y+V+GR LP+E + +P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G++++I EI 
Sbjct: 8   QYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIY 67

Query: 210 EKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIK 389
           EK+P  IKNFGIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R   IQIIK
Sbjct: 68  EKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIK 127

Query: 390 VEVIKAAACRRPQVKQFHTSKIGFPL 467
              + A  C+R   KQFH SKI FPL
Sbjct: 128 TATVPAKLCKRESTKQFHNSKIKFPL 153


>At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC)
           similar to GB:CAA08791 from [Podocoryne carnea]
          Length = 178

 Score =  183 bits (445), Expect = 8e-47
 Identities = 77/146 (52%), Positives = 109/146 (74%)
 Frame = +3

Query: 30  EYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKEIP 209
           +Y+V+GR LP+E++  P +Y+M+++  + + AKS+FWYF+R+LKK KK+ G++++I EI 
Sbjct: 8   QYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAINEIF 67

Query: 210 EKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIK 389
           EK+P  IKN+GIWLRY+SR+G HNMY+EYRD ++ G V Q Y +M +RHR R   IQIIK
Sbjct: 68  EKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQIIK 127

Query: 390 VEVIKAAACRRPQVKQFHTSKIGFPL 467
              + A  C+R   KQFH SKI FPL
Sbjct: 128 TATVPAKLCKREITKQFHNSKIKFPL 153


>At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 867

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +3

Query: 75  KPPLYKMRIFSPDPIVAKSRFWYFL-RQLKKFKKTTGEIVSIKEIPEKSPV 224
           +PP++  R  +P PI +++RF +    Q +    +T E +S  E P K+ V
Sbjct: 11  RPPIFLHRFINPKPISSQTRFLHPPDNQSRDISDSTTETISTLEFPHKTSV 61


>At4g02400.1 68417.m00324 U3 ribonucleoprotein (Utp) family protein
           contains Pfam profile: PF04615 Utp14 protein
          Length = 858

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 15/51 (29%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
 Frame = +3

Query: 156 LKKFKKTTGEIVSIKEIPE-KSPVKIKNFGIWLRYESRSGVHN-MYREYRD 302
           +++F+K   E+++ +E+PE + PV +  +G W   + + G+ + M RE+ D
Sbjct: 679 VEEFEKDKQEVLN-QEVPEPEKPVLVPGWGQWTNVQKKRGLPSWMVREHED 728


>At2g35200.1 68415.m04317 expressed protein
          Length = 201

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 99  IFSPDPIVAKSRFWYFLRQLKKFKKT 176
           +FSP P+ +K   WYF   +K F+++
Sbjct: 160 LFSPTPVTSKGNGWYFPSPIKVFRQS 185


>At1g26870.1 68414.m03277 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to GB:AAD22369, NAM stands for No Apicla
           Meristem
          Length = 425

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 21/56 (37%), Positives = 27/56 (48%)
 Frame = +3

Query: 12  AKGELKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTT 179
           AKG   ++ +   +LPS SEP PP    R F  D  V+ +  W   R  KK   TT
Sbjct: 136 AKGVKTDWMMHEFRLPSLSEPSPP--SKRFF--DSPVSPNDSWAICRIFKKTNTTT 187


>At1g68740.1 68414.m07857 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 784

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 226 LTGLFSGISLMDTISPVVFLNFFNCLKKYQK 134
           LT LF G++ + T   +  L F N LKK+ K
Sbjct: 293 LTELFKGLNYLKTYRNLNILAFMNILKKFDK 323


>At5g49770.1 68418.m06164 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 946

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -3

Query: 239 KVLNLNRTLFWNFLDGYNFTSSLFELLQLPQEIPETRFCHNRIRRENP 96
           K+ +   TL     DG  FT S+ E L L Q +   R   NR+  + P
Sbjct: 215 KLFSSEMTLLHVLFDGNQFTGSIPESLGLVQNLTVLRLDRNRLSGDIP 262


>At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like family
           protein  contains Pfam profile PF04091: Exocyst complex
           subunit Sec15-like
          Length = 771

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 6/114 (5%)
 Frame = +3

Query: 48  RKLPSESEPKPPLYKMRIF-----SPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKEIPE 212
           RK     +P+  L+ ++ F     S    V K+ +  F+  +   K    ++ S+K    
Sbjct: 45  RKTFGTGKPETLLHHLKFFARSKESEIEEVCKAHYQDFIHAVDDLKSLLSDVESLKSALS 104

Query: 213 KSPVKIKNFGIWLRYESRSGVH-NMYREYRDLSVGGAVTQCYRDMGARHRARAH 371
            S  K+++    L     S V      +  DL++G AVT C R M    RA  H
Sbjct: 105 DSNSKLQSVAAPLLSSLDSLVEAQTVSKNVDLAIG-AVTHCVRVMELVSRANQH 157


>At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family protein
           contains Pfam profile: PF04615 Utp14 protein
          Length = 822

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
 Frame = +3

Query: 165 FKKTTGEIVSIKEIPE-KSPVKIKNFGIWLRYESRSGV-HNMYREYRD 302
           F+K   E+++ +E+PE + PV++  +G W   +++ G+   + RE+ +
Sbjct: 665 FEKDKQEVLN-QEVPEPEKPVQVAGWGHWTNNQNKRGLPSRIVREHEE 711


>At5g04700.1 68418.m00478 hypothetical protein
          Length = 669

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
 Frame = +3

Query: 180 GEIVS-IKEIPEKSPVKIKNFGIWLRY-ES-------RSGVHNMYREYRDLSVG---GAV 323
           G+ VS IKE+PE+  V      I + + ES       R    N+Y EY  LS G   G V
Sbjct: 34  GDSVSPIKEVPEEEEVPNDPVNIQIPFIESALSTSRLRGKNTNVYYEYIQLSQGISQGRV 93

Query: 324 TQCYRDMGARHRARAHS-IQIIKVEVIKAAACRRPQV 431
            +  +D    H       I + +  ++KA AC +P++
Sbjct: 94  -EIVKDFLNHHPDSVDEWINLYETPLLKACACGKPEI 129


>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
           subunit (GB1) / GTP-binding protein beta subunit (AGB1)
           / transducin contains 7 WD-40 repeats (PF00400);
           identical to Guanine nucleotide-binding protein beta
           subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
           al, PNAS 91:9954 (1994)
          Length = 347

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 451 LLVWNCLTCGRRHAAALITSTLMIC 377
           L+VWN LT  + HA  L  + +M C
Sbjct: 89  LIVWNALTSQKTHAIKLPCAWVMTC 113


>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
           subunit (GB1) / GTP-binding protein beta subunit (AGB1)
           / transducin contains 7 WD-40 repeats (PF00400);
           identical to Guanine nucleotide-binding protein beta
           subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
           al, PNAS 91:9954 (1994)
          Length = 315

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 451 LLVWNCLTCGRRHAAALITSTLMIC 377
           L+VWN LT  + HA  L  + +M C
Sbjct: 27  LIVWNALTSQKTHAIKLPCAWVMTC 51


>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
           subunit (GB1) / GTP-binding protein beta subunit (AGB1)
           / transducin contains 7 WD-40 repeats (PF00400);
           identical to Guanine nucleotide-binding protein beta
           subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
           al, PNAS 91:9954 (1994)
          Length = 377

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 451 LLVWNCLTCGRRHAAALITSTLMIC 377
           L+VWN LT  + HA  L  + +M C
Sbjct: 89  LIVWNALTSQKTHAIKLPCAWVMTC 113


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,639,080
Number of Sequences: 28952
Number of extensions: 237958
Number of successful extensions: 746
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)