Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_E24
         (537 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3123| Best HMM Match : No HMM Matches (HMM E-Value=.)              126   3e-33
SB_17050| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_488| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   1.4  
SB_32940| Best HMM Match : EGF (HMM E-Value=0)                         29   3.2  
SB_1011| Best HMM Match : 7tm_2 (HMM E-Value=2e-40)                    29   3.2  
SB_25482| Best HMM Match : PP2C (HMM E-Value=2.4e-24)                  27   7.3  
SB_38758| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_640| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   9.7  

>SB_3123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score =  126 bits (305), Expect(2) = 3e-33
 Identities = 58/119 (48%), Positives = 80/119 (67%)
 Frame = +1

Query: 10  GHSDVIMGAAIVNDGVIAAKLRFLQNAMGIVPSPMDCYLVNRSLKTLAIRMEQHKKSSLI 189
           GHSDV  G    N+  +A KL+FLQ A G VPSP DCYL NR LKTL +RM +H++++  
Sbjct: 113 GHSDVCTGVIATNNDELAKKLKFLQFASGPVPSPFDCYLANRGLKTLHVRMREHERNAKA 172

Query: 190 IANWLLKHPKVKDVLHPGLPSHPQHEITKKQTSGHSGVFSFVHVGGLKESNKFLSSLKI 366
           +A++L K P+V  V +PGL SHPQHE+ K+Q +G  G+ +F   G L  + +FL  +KI
Sbjct: 173 VASFLEKDPRVTAVKYPGLQSHPQHELAKRQMTGFGGMVTFYIKGDLNTATEFLKQVKI 231



 Score = 32.7 bits (71), Expect(2) = 3e-33
 Identities = 14/18 (77%), Positives = 17/18 (94%)
 Frame = +1

Query: 484 VRLSVGLEDTEDLIADLE 537
           +RLSVGLEDT+DLI DL+
Sbjct: 231 IRLSVGLEDTKDLINDLD 248


>SB_17050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 29/95 (30%), Positives = 45/95 (47%)
 Frame = +1

Query: 100 VPSPMDCYLVNRSLKTLAIRMEQHKKSSLIIANWLLKHPKVKDVLHPGLPSHPQHEITKK 279
           V S +  +L+N S   +    +Q KK++  +A   L    V+ VL P + +  Q E+  K
Sbjct: 10  VVSLLQVFLLNTSFGDVT-EHKQSKKATATLAK--LFQRSVEKVLIPLIKA--QTEVANK 64

Query: 280 QTSGHSGVFSFVHVGGLKESNKFLSSLKIFTLAES 384
           +      VFS V +  L+E   FLS   +   AES
Sbjct: 65  KCRVSLQVFSLVVLQILRELETFLSRFSVLNNAES 99


>SB_488| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 29/95 (30%), Positives = 46/95 (48%)
 Frame = +1

Query: 100 VPSPMDCYLVNRSLKTLAIRMEQHKKSSLIIANWLLKHPKVKDVLHPGLPSHPQHEITKK 279
           V S +  +L+N S   +  R +Q K+++  +A   L    V+ VL P + +  Q E+  K
Sbjct: 10  VVSLLQVFLLNTSFGDVTER-KQSKEATATLAK--LFQISVEKVLIPLIKA--QTEVANK 64

Query: 280 QTSGHSGVFSFVHVGGLKESNKFLSSLKIFTLAES 384
           +      VFS V +  L+E   FLS   +   AES
Sbjct: 65  KCRVSLQVFSLVVLQILRELETFLSRFSVLNNAES 99


>SB_32940| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1025

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 6   ERTFRCDYGSGYRQRRC 56
           E  +RCD G GYR R C
Sbjct: 531 ENNYRCDCGHGYRGRHC 547


>SB_1011| Best HMM Match : 7tm_2 (HMM E-Value=2e-40)
          Length = 406

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -2

Query: 392 PPK-LSASVKIFNELKNLFDSFKPPTC 315
           PPK LS  VKI  E K +FD   P TC
Sbjct: 117 PPKQLSGRVKIVLENKKVFDPVPPQTC 143


>SB_25482| Best HMM Match : PP2C (HMM E-Value=2.4e-24)
          Length = 316

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +1

Query: 421 VMTHASVPAEQRAQLGITDSLVRLSVGLEDTEDL 522
           VMT+  V A  R++L ITD L R+S  LE+  +L
Sbjct: 132 VMTNDEVGAFVRSRLQITDDLQRVSSLLEEETNL 165


>SB_38758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 324

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 169 HKKSSLIIANWLLKHPKVKDVLHPGLPSHPQHEITKKQ 282
           ++ S ++   WLL+H    D+  P  PS  Q    +K+
Sbjct: 188 NRMSPMLAMEWLLQHESDSDIDEPSTPSTSQGRTHRKR 225


>SB_640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 917

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 448 RRVPTRASXPTVIPPNSRILPNFQP 374
           R   T AS P+V PP++ +LP   P
Sbjct: 621 RETTTTASSPSVSPPDTPMLPALSP 645


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.133    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,832,560
Number of Sequences: 59808
Number of extensions: 300305
Number of successful extensions: 761
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)