Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_E24
         (537 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   4.6  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   6.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   8.0  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 124 LVNRSLKTLAIRMEQHKKSSLIIANWLLKHPKVKDVLHP 240
           +++ +   LAI + +H  SS    N  + H   K ++HP
Sbjct: 205 IIDENTTKLAIVVGEHDWSSKTETNATVLHSINKVIIHP 243


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 454 RAQLGITDSLVRLSVGLEDTEDL 522
           R  LGIT  L    +GLE   DL
Sbjct: 245 RVSLGITTVLTMTFLGLEARTDL 267


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 250 SHPQHEITKKQTSGHSG 300
           S PQ++I K+    H G
Sbjct: 369 SRPQYQIDKRSMGSHHG 385


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.133    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,110
Number of Sequences: 438
Number of extensions: 2484
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)