Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_E21
         (125 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    24   2.4  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    23   4.2  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    23   5.6  
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    23   5.6  

>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 19  TRAIPAIILLTANNNRVKMSLPRPVVILGQ 108
           T  +  + LL  NN +++  L   +V+LGQ
Sbjct: 127 TEDLKQLFLLIFNNGKLRTLLQNAIVLLGQ 156


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 89  GLGSDILTLLLFAVNKMIAGIALVKVWH 6
           G+  D++T     VNKM    AL+K +H
Sbjct: 542 GVNKDLITRPFKNVNKMSVRKALIKPFH 569


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 13  TLTRAIPAIILLTANNNRVKMSLPR 87
           ++ +A  +I L+  NNNR  + LP+
Sbjct: 243 SVCQAAESISLIAVNNNRPPVELPK 267


>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = +2

Query: 53  QTIIESKCHYQGPW*YWASYGC 118
           Q  I+   H +G W  W   GC
Sbjct: 386 QRTIKEIIHIEGNWKLWKGLGC 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 497,572
Number of Sequences: 5004
Number of extensions: 5264
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 2,362,478
effective HSP length: 22
effective length of database: 2,252,390
effective search space used: 42795410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)