Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_E21
         (125 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0461 - 3280874-3281757,3281777-3282343,3282398-3283249,328...    27   2.8  
06_01_0462 - 3285667-3288123                                           26   4.9  
10_08_0327 + 16797366-16800639,16800979-16801067,16801120-16801593     25   6.5  
07_03_0635 + 20151861-20152249,20152589-20152709,20154914-201549...    25   6.5  
04_04_1410 + 33363784-33364086,33364221-33364280,33364388-333644...    25   6.5  
01_01_0430 + 3258438-3259200,3259929-3261454                           25   6.5  
11_03_0162 - 10956997-10957323,10957390-10957568,10957823-109579...    25   8.6  

>06_01_0461 -
           3280874-3281757,3281777-3282343,3282398-3283249,
           3284503-3284644
          Length = 814

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 80  SDILTLLLFAVNKMIAGIALVKVW 9
           S +LT+LL  V  ++AG ++VK W
Sbjct: 488 SSLLTVLLIEVVLIVAGFSVVKKW 511


>06_01_0462 - 3285667-3288123
          Length = 818

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 80  SDILTLLLFAVNKMIAGIALVKVW 9
           S +LTLLL  V  +I G ++V+ W
Sbjct: 480 SSVLTLLLIEVVLIIVGFSVVRKW 503


>10_08_0327 + 16797366-16800639,16800979-16801067,16801120-16801593
          Length = 1278

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 1   GTCQTLTRAIPAIILLTANNNRVKMSLPRPVVILGQLWLLI 123
           GT       + A+ILL  + NR+   +P  +  L QL +L+
Sbjct: 707 GTIPVAISKLDALILLDLSKNRLSGEIPSELGNLAQLQILL 747


>07_03_0635 +
           20151861-20152249,20152589-20152709,20154914-20154996,
           20155819-20155903,20155987-20156277,20156555-20156645,
           20157380-20158280,20158401-20158561,20158759-20158862,
           20159040-20159205,20159283-20159378,20159694-20159800,
           20160443-20160775,20161393-20161599,20161774-20161857,
           20162887-20163020,20163166-20163393,20163541-20163712,
           20164301-20164555,20164647-20164919
          Length = 1426

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 53  QTIIESKCHYQGPW*YWASYG 115
           +  ++SK ++ G W YW S G
Sbjct: 756 KAFLQSKGYFTGEWGYWLSIG 776


>04_04_1410 +
           33363784-33364086,33364221-33364280,33364388-33364464,
           33365032-33365089,33365179-33365262,33365358-33365394,
           33365855-33365924,33366655-33366849,33366947-33367039,
           33367187-33367418,33367515-33367598,33368205-33368301,
           33368510-33368577,33368662-33368739,33368823-33368945,
           33369059-33369172,33369288-33369368
          Length = 617

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -1

Query: 104 PSITTGLGSDILTLLLFAVNKMIAGIALVKVW 9
           P +    G D L  L      ++AG+ ++ VW
Sbjct: 18  PELAAAAGGDPLAALAATAAALVAGVVILAVW 49


>01_01_0430 + 3258438-3259200,3259929-3261454
          Length = 762

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 13  TLTRAIPAIILLTANNNRVKMSLPRPVVILGQL 111
           T T+ +   +L+  +NNR   S+P  +  L  L
Sbjct: 597 TFTKILKTFVLIDVSNNRFHGSIPETIATLSVL 629


>11_03_0162 -
           10956997-10957323,10957390-10957568,10957823-10957922,
           10959333-10959397,10959480-10959572,10961062-10961607,
           10961627-10961678,10961753-10961884,10963049-10963210,
           10963532-10963582
          Length = 568

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 28  IPAIILLTANNNRVKMSLPRPVVILGQLW 114
           +  II    NN+  K +L R ++++ QLW
Sbjct: 415 VALIIAFVINNDPNKTNLSRLLIVMWQLW 443


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,353,104
Number of Sequences: 37544
Number of extensions: 36514
Number of successful extensions: 117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 14,793,348
effective HSP length: 22
effective length of database: 13,967,380
effective search space used: 265380220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)