Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_E21
         (125 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016447-1|AAG24019.1|  341|Caenorhabditis elegans Seven tm rece...    26   4.3  
AF067948-6|AAC17701.1|  337|Caenorhabditis elegans Seven tm rece...    25   7.4  

>AF016447-1|AAG24019.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 31 protein.
          Length = 341

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 4   TCQTLTRAIPAIILLTANNNRVKMSLPRPVVI 99
           T  TLT  IPA+++LT     ++ S P  V++
Sbjct: 255 TSPTLTFYIPAVLILTVPFLNLEWSFPTGVIV 286


>AF067948-6|AAC17701.1|  337|Caenorhabditis elegans Seven tm
           receptor protein 30 protein.
          Length = 337

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 4   TCQTLTRAIPAIILLTANNNRVKMSLPRPVVI 99
           T  T T  IPAI++LT     +K +LP  +++
Sbjct: 252 TSPTFTFYIPAILILTVPFFDLKFNLPTGLIV 283


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,827,817
Number of Sequences: 27780
Number of extensions: 30633
Number of successful extensions: 71
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 12,740,198
effective HSP length: 22
effective length of database: 12,129,038
effective search space used: 230451722
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)