Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_E21
         (125 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40400.2 68415.m04982 expressed protein similar to GI:7572912...    26   3.0  
At2g40400.1 68415.m04981 expressed protein similar to GI:7572912...    26   3.0  
At3g30420.1 68416.m03847 hypothetical protein low similarity to ...    25   9.3  
At1g54430.1 68414.m06209 hypothetical protein                          25   9.3  

>At2g40400.2 68415.m04982 expressed protein similar to GI:7572912
          (At3g56140)[Arabidopsis thaliana]
          Length = 735

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 40 ILLTANNNRVKMSLPRPVVI 99
          I+ +ANNN+ K +LP P V+
Sbjct: 29 IIFSANNNQKKKNLPNPNVV 48


>At2g40400.1 68415.m04981 expressed protein similar to GI:7572912
          (At3g56140)[Arabidopsis thaliana]
          Length = 735

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 40 ILLTANNNRVKMSLPRPVVI 99
          I+ +ANNN+ K +LP P V+
Sbjct: 29 IIFSANNNQKKKNLPNPNVV 48


>At3g30420.1 68416.m03847 hypothetical protein low similarity to
           SP|Q9UUA2 DNA repair and recombination protein pif1,
           mitochondrial precursor {Schizosaccharomyces pombe}
          Length = 837

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 61  NRVKMSLPRPVVILGQLWLLI 123
           NRV + LP+PV   GQL++ +
Sbjct: 774 NRVALYLPKPVFSHGQLYVAL 794


>At1g54430.1 68414.m06209 hypothetical protein
          Length = 1639

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 61   NRVKMSLPRPVVILGQLWLLI 123
            NRV + LP+PV   GQL++ +
Sbjct: 1576 NRVALYLPKPVFSHGQLYVAL 1596


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,677,952
Number of Sequences: 28952
Number of extensions: 28920
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 12,070,560
effective HSP length: 22
effective length of database: 11,433,616
effective search space used: 217238704
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)