Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_E20
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    34   0.018
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    30   0.22 
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    28   0.91 
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   3.7  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    26   4.8  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   4.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   6.4  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    25   8.5  

>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 33.9 bits (74), Expect = 0.018
 Identities = 31/123 (25%), Positives = 46/123 (37%), Gaps = 2/123 (1%)
 Frame = +3

Query: 99   NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 278
            +P Y+P        +P Y+P        +P Y+P        +P Y P        +P Y
Sbjct: 1596 SPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1655

Query: 279  NPGQVHVVDNSGVPS-DGNSDHVVIANPDPFFSQPSNGP-SGNYEPISTGPAFVDFNHPN 452
            +P        S  PS    S      +P    + PS  P S +Y P  T P++     P+
Sbjct: 1656 SPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP--TSPSYSP-TSPS 1710

Query: 453  YPP 461
            Y P
Sbjct: 1711 YSP 1713



 Score = 33.5 bits (73), Expect = 0.024
 Identities = 31/123 (25%), Positives = 46/123 (37%), Gaps = 2/123 (1%)
 Frame = +3

Query: 99   NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 278
            +P Y+P        +P Y+P        +P Y+P        +P Y P        +P Y
Sbjct: 1582 SPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1641

Query: 279  NPGQVHVVDNSGVPS-DGNSDHVVIANPDPFFSQPSNGP-SGNYEPISTGPAFVDFNHPN 452
            +P        S  PS    S      +P    + PS  P S +Y P  T P++     P+
Sbjct: 1642 SPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP--TSPSYSP-TSPS 1696

Query: 453  YPP 461
            Y P
Sbjct: 1697 YSP 1699



 Score = 32.3 bits (70), Expect = 0.056
 Identities = 31/123 (25%), Positives = 45/123 (36%), Gaps = 2/123 (1%)
 Frame = +3

Query: 99   NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 278
            +P Y P        +P Y+P        +P Y+P        +P Y P        +P Y
Sbjct: 1568 SPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSY 1627

Query: 279  NPGQVHVVDNSGVPS-DGNSDHVVIANPDPFFSQPSNGP-SGNYEPISTGPAFVDFNHPN 452
            +P        S  PS    S      +P    + PS  P S +Y P  T P++     P+
Sbjct: 1628 SPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP--TSPSYSP-TSPS 1682

Query: 453  YPP 461
            Y P
Sbjct: 1683 YSP 1685



 Score = 31.1 bits (67), Expect = 0.13
 Identities = 15/62 (24%), Positives = 24/62 (38%)
 Frame = +3

Query: 99   NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 278
            +P Y+P        +P Y+P        +P Y+P        +P Y P        +P Y
Sbjct: 1659 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1718

Query: 279  NP 284
            +P
Sbjct: 1719 SP 1720



 Score = 31.1 bits (67), Expect = 0.13
 Identities = 15/62 (24%), Positives = 24/62 (38%)
 Frame = +3

Query: 99   NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 278
            +P Y+P        +P Y+P        +P Y+P        +P Y P        +P Y
Sbjct: 1666 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1725

Query: 279  NP 284
            +P
Sbjct: 1726 SP 1727



 Score = 31.1 bits (67), Expect = 0.13
 Identities = 15/62 (24%), Positives = 24/62 (38%)
 Frame = +3

Query: 99   NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 278
            +P Y+P        +P Y+P        +P Y+P        +P Y P        +P Y
Sbjct: 1673 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1732

Query: 279  NP 284
            +P
Sbjct: 1733 SP 1734



 Score = 31.1 bits (67), Expect = 0.13
 Identities = 15/62 (24%), Positives = 24/62 (38%)
 Frame = +3

Query: 99   NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 278
            +P Y+P        +P Y+P        +P Y+P        +P Y P        +P Y
Sbjct: 1680 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1739

Query: 279  NP 284
            +P
Sbjct: 1740 SP 1741



 Score = 31.1 bits (67), Expect = 0.13
 Identities = 15/62 (24%), Positives = 24/62 (38%)
 Frame = +3

Query: 99   NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 278
            +P Y+P        +P Y+P        +P Y+P        +P Y P        +P Y
Sbjct: 1687 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1746

Query: 279  NP 284
            +P
Sbjct: 1747 SP 1748


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 306 NSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPI 413
           N  V  DG +  VVI  P   F+ P+N  S N+ P+
Sbjct: 402 NHSVTGDGEAKQVVITMPSTHFT-PANNSSANHSPL 436


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 165 VHVVD-HNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDYNPGQVHVV 302
           ++ +D HN + N   V V+  N  ++    +V+  NPD+ P  + VV
Sbjct: 537 INAIDVHNSEQNLLAVFVIFRNLSHFEANQNVLVQNPDFFPLLIRVV 583



 Score = 25.8 bits (54), Expect = 4.8
 Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 7/134 (5%)
 Frame = +3

Query: 81  VHVVD-HNPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVD----HNPDYYPG 245
           ++ +D HN + N   V V+  N  +     +V+  NPD+ P  + VV     H       
Sbjct: 537 INAIDVHNSEQNLLAVFVIFRNLSHFEANQNVLVQNPDFFPLLIRVVKSLNFHATSLLRS 596

Query: 246 QVHVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVV--IANPDPFFSQPSNGPSGNYEPIST 419
             + +D + D       +  N  +P+   + HV+  I +  PF  + S     +  P S 
Sbjct: 597 SRNTLDLHKDVLIVLCQLSQNFILPNVDVARHVLLFILSFSPFNRKKSKTILNDTLPTSI 656

Query: 420 GPAFVDFNHPNYPP 461
            P++    HP   P
Sbjct: 657 -PSYTPATHPYAGP 669


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +3

Query: 339 HVVIANPDPFFSQPSNGPSGNY-EPISTGPAF-VDFNHPNYPPKRYDNP 479
           HV ++NPD     P +  S NY  P+    A   +F+ P +   +Y +P
Sbjct: 478 HVSLSNPDFAIGSPMSQDSSNYSSPLHRRKASDSNFSDPRFDDLKYLSP 526


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
 Frame = +3

Query: 366  FFSQPSNGP----SGNYEPISTGPAFVDF 440
            F + P+N P    SG+Y PI   P F  F
Sbjct: 1560 FVTPPTNSPYAEVSGDYNPIHVSPTFAAF 1588


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +3

Query: 396 GNYEPI--STGPAFVDFNHPNYPPKRYDNPLAR 488
           G+Y P   ST P    + +P+YPP  Y    AR
Sbjct: 117 GSYPPTQPSTQPLPQSYGYPSYPPAGYRGGSAR 149


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +3

Query: 372 SQPSNGPSGNYEPISTGPAFVDFNHPNYPP 461
           S P N P     P+S  PA    + P  PP
Sbjct: 265 SSPPNSPPRPIAPVSMNPAINSTSKPPLPP 294


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
 Frame = +3

Query: 168 HVVDHNPDYNPGQVHVVD---HNPDYYPGQVH-VVDHNPDYNPGQVHVVDNSGVPSDGNS 335
           H  + N D     +H +D   +  + +P Q++  + HN DY       V   G+P  G  
Sbjct: 419 HNSNENGDLITNSLHGLDFLENANESFPEQMYPFIKHNKDYISNHPDEVPPDGLPQKGKH 478

Query: 336 D 338
           D
Sbjct: 479 D 479


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,520,100
Number of Sequences: 5004
Number of extensions: 57844
Number of successful extensions: 173
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)