Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_E19
(324 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ... 26 1.2
SPAC25H1.03 |mug66|mug66|meiotically upregulated gene Mug66|Schi... 25 2.1
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz... 25 2.8
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 25 3.7
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 24 4.9
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 24 4.9
SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc... 24 4.9
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 24 6.5
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 24 6.5
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 23 8.6
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 23 8.6
>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
Str2 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 26.2 bits (55), Expect = 1.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 136 LPRCHDPSXPTPEIVVLTLLTNIISMFPLFNICY 35
LP H +P+ +LTL T +S+ L +C+
Sbjct: 298 LPFSHSSQVVSPDSTILTLFTITLSIALLVTLCF 331
>SPAC25H1.03 |mug66|mug66|meiotically upregulated gene
Mug66|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 25.4 bits (53), Expect = 2.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 269 HRTFRTGQAKTSMVLDSYLPILLASQL 189
HR F T A+T VLD +P L+ ++L
Sbjct: 30 HRQFSTVPARTIDVLDITVPTLVGAEL 56
>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
L35|Schizosaccharomyces pombe|chr 2|||Manual
Length = 370
Score = 25.0 bits (52), Expect = 2.8
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 172 VADYKQQ-HSKVQLPRCHDPSXPTPEIVVLTLLTNI 68
+ +Y ++ H K+Q +PS +PEI L +L+ I
Sbjct: 98 IQEYSEKVHKKLQAKLLENPSETSPEIERLQVLSQI 133
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 24.6 bits (51), Expect = 3.7
Identities = 11/47 (23%), Positives = 24/47 (51%)
Frame = -1
Query: 264 NVSYRASEDKYGSRFLSANPLGFPVDRPLHLWQITNNNIQKFNFHDV 124
N+S +DK+ + + P ++ W +TN+N+ +F++V
Sbjct: 124 NISAIFCDDKFPYAYATFTFSDKPSFTSIYRWNVTNSNVTIEHFYNV 170
>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 760
Score = 24.2 bits (50), Expect = 4.9
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 287 IFLNSMHRTFRTGQAKTSMVLDSYLPILLASQLIGHYT 174
IFL + + FR +A ++ D+YL SQ+I +YT
Sbjct: 297 IFLPTPYTGFRAMRA--GLLTDTYLECHYVSQIIKNYT 332
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 24.2 bits (50), Expect = 4.9
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3
Query: 219 GIENHTCLRLPCTKRSVHGIQK 284
G+EN CL + C + ++G +K
Sbjct: 226 GLENCECLCVSCERMGINGFKK 247
>SPCC1442.08c |cox12||cytochrome c oxidase subunit
VIb|Schizosaccharomyces pombe|chr 3|||Manual
Length = 83
Score = 24.2 bits (50), Expect = 4.9
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = -2
Query: 59 VSFI*YMLPNIDYIRHCF 6
+S++ Y PN + +HCF
Sbjct: 14 ISYLLYRFPNTNQTKHCF 31
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 23.8 bits (49), Expect = 6.5
Identities = 8/31 (25%), Positives = 20/31 (64%)
Frame = +3
Query: 15 SYIINIR*HILNKGNIEIIFVKSVRTTISGV 107
+YI+++ +LN+ N+++I+ + T G+
Sbjct: 552 AYIVHLLHGVLNRNNVKLIYETAALTGAKGL 582
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 23.8 bits (49), Expect = 6.5
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -2
Query: 275 SMHRTFRTGQAKTSMVLDSYLPILLASQLIG 183
++ R+F +G + + ++DS PI L +IG
Sbjct: 1019 TLQRSFLSGLSVCTGIIDSLAPISLTIPIIG 1049
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 23.4 bits (48), Expect = 8.6
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 152 LLFVICHRCSGLSTGKP 202
LLF IC CS LS+ P
Sbjct: 1427 LLFDICRGCSKLSSSDP 1443
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 23.4 bits (48), Expect = 8.6
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 136 LPRCHDPSXPTPEIVVLTLLTN 71
LP CH PS + E +++ TN
Sbjct: 681 LPNCHVPSNLSTESLLIKFYTN 702
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,348,709
Number of Sequences: 5004
Number of extensions: 25033
Number of successful extensions: 72
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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