Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_E19
         (324 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0174 - 15124079-15124115,15124198-15124302,15124333-151249...    30   0.36 
01_06_1728 + 39480252-39480450,39480552-39481224,39481554-394816...    28   1.9  
05_03_0164 - 9078814-9079908                                           27   2.6  
10_08_0605 + 19158167-19158309,19158726-19158834,19159099-191592...    27   4.5  
07_01_0570 + 4228567-4228852,4229198-4229217                           26   5.9  
03_02_0948 - 12645972-12646010,12646612-12646750,12646846-126470...    26   5.9  
03_02_0418 - 8291605-8291727,8291834-8291999,8292088-8292191,829...    26   5.9  

>03_03_0174 -
           15124079-15124115,15124198-15124302,15124333-15124942,
           15125081-15125462
          Length = 377

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 170 HRCSGLSTGKPRGLADRNREPYLSSLALYETFGAWNSE 283
           HRC   S   P  L D  R   ++S  LY+  GAW  E
Sbjct: 261 HRCPSKSPVAPPPLCDDCRADSITSWVLYDHSGAWAEE 298


>01_06_1728 +
           39480252-39480450,39480552-39481224,39481554-39481638,
           39481731-39481820,39481953-39482026,39482421-39482505,
           39482582-39482668,39482797-39482927,39483642-39483723,
           39483810-39483857,39484793-39484912
          Length = 557

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 276 FHAPNVSYRASEDKYGSRFLSANPLGFPVD 187
           +H P  SY  S+DK G   LS   + F V+
Sbjct: 322 YHTPKSSYSYSDDKLGGNVLSVGDIPFFVN 351


>05_03_0164 - 9078814-9079908
          Length = 364

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 170 HRCSGLSTGKPRGLADRNREPY-LSSLALYETFGAWNSE 283
           +R  G+S G+ R +    ++P+ LSS AL + +G W  E
Sbjct: 317 YRRIGVSEGRLRYVEVSQKKPFVLSSFALDDDYGCWTLE 355


>10_08_0605 +
           19158167-19158309,19158726-19158834,19159099-19159224,
           19159388-19159543,19159623-19159805,19159904-19160020,
           19160528-19160581,19160661-19160732,19160947-19161058,
           19161188-19161284,19161434-19161528,19162093-19162167,
           19162307-19162390,19162602-19162700,19163167-19163207
          Length = 520

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = -3

Query: 316 WWYAVCIDGLYF*IPCTERFVQGKRRQVWFSIPICQS 206
           WWY VC +  YF +      V+  +    + + +C++
Sbjct: 362 WWYQVCSEVAYFQVAPKNDSVRSAKIDTRYHLDLCRN 398


>07_01_0570 + 4228567-4228852,4229198-4229217
          Length = 101

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 288 YISEFHAPNVSYRASEDKYGSRFLSANPLGF 196
           Y   +H P + Y    + YGS    A+P GF
Sbjct: 68  YFGAYHEPTIGYAPHSEYYGSMVSHAHP-GF 97


>03_02_0948 -
           12645972-12646010,12646612-12646750,12646846-12647090,
           12647184-12647505,12647781-12648005,12648185-12648351,
           12648428-12648544,12648989-12649162,12649372-12649467,
           12649624-12649840,12650267-12650385,12650478-12650670,
           12651212-12651363,12651485-12651611,12651731-12651828
          Length = 809

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 225 ENHTCLRLPCTKRSVHGIQKYRPSIH 302
           E+HT   LP   R VHGI  + P  +
Sbjct: 495 ESHTAFTLPGLYRIVHGIDVFDPKFN 520


>03_02_0418 -
           8291605-8291727,8291834-8291999,8292088-8292191,
           8292280-8292456
          Length = 189

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 240 DKYGSRFLSANPLGFPVDRPLHLWQITNNNIQK 142
           DK+GS F  A   G  +  P+  WQ+ +  ++K
Sbjct: 129 DKFGSDFAEAAKDGTGIVDPMVFWQLNSMELKK 161


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,423,940
Number of Sequences: 37544
Number of extensions: 159109
Number of successful extensions: 356
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)