Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_E19
         (324 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.6  
SB_36342| Best HMM Match : Viral_helicase1 (HMM E-Value=1.1)           27   3.5  
SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_35067| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_50147| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_46512| Best HMM Match : TIL (HMM E-Value=1.3)                       26   6.1  
SB_35533| Best HMM Match : Ldl_recept_b (HMM E-Value=9.8e-05)          26   6.1  
SB_40964| Best HMM Match : DUF564 (HMM E-Value=7.2)                    26   6.1  
SB_2295| Best HMM Match : C1_1 (HMM E-Value=2.5)                       26   6.1  
SB_6985| Best HMM Match : PSD2 (HMM E-Value=2)                         26   8.1  
SB_58730| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.1  
SB_58034| Best HMM Match : VWA (HMM E-Value=0)                         26   8.1  

>SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 828

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 163 YKQQHSKVQLPRCHDPSXPTPEI 95
           Y Q+   V LP+CH    P PEI
Sbjct: 309 YVQEGDNVMLPKCHVTGFPLPEI 331


>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3592

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -3

Query: 163 YKQQHSKVQLPRCHDPSXPTPEIVVLTLLTNIISMFPLFNICYLILII 20
           + +QH +  L    +   P PE+VV  LL +      +F   +L+++I
Sbjct: 851 FPRQHVEYALKELREEEDPRPELVVAWLLDHPEVSCTVFPTVFLVIVI 898


>SB_36342| Best HMM Match : Viral_helicase1 (HMM E-Value=1.1)
          Length = 872

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 281 LNSMHRTFRTGQAKTSMVLDSYL 213
           L++ HR F+TG   T+  LD+YL
Sbjct: 816 LHTTHRAFQTGAKTTNWGLDAYL 838


>SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1829

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -2

Query: 320  VLVVCRMY*WSIFLNSM--HRTFRTGQAKTSMVLDSYLPILLASQLIGHYT 174
            V+   R+  WSI + +   H  +R G    +    S LP+ + +Q I H+T
Sbjct: 1343 VMASPRIQRWSILMRAYQYHMKYRAGNQHANADCMSRLPLPVKAQQISHWT 1393


>SB_35067| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 612

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 133 PRCHDPSXPTPEIVVLTLLTNII 65
           P  HDP  P P I+  +L+T+I+
Sbjct: 524 PVVHDPPAPDPPIIPDSLITSIV 546


>SB_50147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 739

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +3

Query: 165 SATGVVAYQLGSQ----EDWQIGIENHTCLRLPCTKRSVHGIQ 281
           + TGV A ++ S      D + GI+ H C      K SVHGI+
Sbjct: 554 TTTGVDAAEVASVWDVVSDRRFGIKQHPCKSARVFKGSVHGIE 596


>SB_46512| Best HMM Match : TIL (HMM E-Value=1.3)
          Length = 382

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 310 YAVCIDGLYF*IPCTERFVQGKRRQVWFSIPICQSSWLPS 191
           YAVC +  +    CT  FV+G  R V F++ +   +W+ S
Sbjct: 39  YAVC-EPDHVDAECTRPFVRGSLRCVLFTLCVSPITWMLS 77


>SB_35533| Best HMM Match : Ldl_recept_b (HMM E-Value=9.8e-05)
          Length = 909

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 310 YAVCIDGLYF*IPCTERFVQGKRRQVWFSIPICQSSWLPS 191
           YAVC +  +    CT  FV+G  R V F++ +   +W+ S
Sbjct: 39  YAVC-EPDHVDAECTRPFVRGSLRCVLFTLCVSPITWMLS 77


>SB_40964| Best HMM Match : DUF564 (HMM E-Value=7.2)
          Length = 193

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 208 IGR*ESRTILVFACPVRNVRCMEFRNIDHQYIRH 309
           +GR E+ T L  A PV N   +EF  +D+  I+H
Sbjct: 39  MGREENVTKLFAARPVDNCSAIEFPLLDNPTIKH 72


>SB_2295| Best HMM Match : C1_1 (HMM E-Value=2.5)
          Length = 363

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 281 LNSMHRTFRTGQAKTSMVLDSYL 213
           L+ +HR F+TG   T   LD YL
Sbjct: 85  LHIVHRAFKTGAKTTGWNLDQYL 107


>SB_6985| Best HMM Match : PSD2 (HMM E-Value=2)
          Length = 254

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 245 AKTSMVLDSYLPILLASQLIGHYTCG 168
           A+T  V  SYLPI+   Q +G+Y  G
Sbjct: 225 AETEPVSKSYLPIMKIGQGMGYYWVG 250


>SB_58730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1014

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -1

Query: 303 YVLMVYISEFHAPNVSYRASEDKYGSRF-LSANPLGFPVDRPLHLWQITNNNIQ 145
           Y L    +E+ A   +YR + D+Y  ++ +  +   FPVD  ++   +   N++
Sbjct: 712 YQLATQTAEYWASRANYRDAADQYVIQYVMPPDEYQFPVDNSVYTNVVAKLNLE 765


>SB_58034| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1203

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 321  RVGGMPYVLMVYISEFHAPNVSYR 250
            R+GG+P   +V+I +F   NV+YR
Sbjct: 942  RLGGLPLSTLVFIGKF-GKNVNYR 964


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,002,626
Number of Sequences: 59808
Number of extensions: 196406
Number of successful extensions: 392
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 438034835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)