Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_E19
         (324 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132865-19|CAJ76951.1|  220|Caenorhabditis elegans Hypothetical...    28   1.3  
Z78539-1|CAB01727.1|  350|Caenorhabditis elegans Hypothetical pr...    27   2.3  
AC024750-1|AAF60437.2|  240|Caenorhabditis elegans Hypothetical ...    27   2.3  
U40409-9|AAA81390.3|  314|Caenorhabditis elegans Stomatin protei...    27   3.1  
Z81143-3|CAB03519.2|  276|Caenorhabditis elegans Hypothetical pr...    26   7.2  
U50301-13|AAB37054.2|  549|Caenorhabditis elegans Hypothetical p...    26   7.2  
U29536-2|AAA68790.1|  759|Caenorhabditis elegans Brf (transcript...    26   7.2  
AF077534-8|AAC26287.1|  312|Caenorhabditis elegans Proteasome re...    25   9.5  
AF025457-11|AAB70970.1|  240|Caenorhabditis elegans Hypothetical...    25   9.5  

>AL132865-19|CAJ76951.1|  220|Caenorhabditis elegans Hypothetical
           protein Y62E10A.20 protein.
          Length = 220

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = -1

Query: 300 VLMVYISEFHAPNVSYRASEDKYGSRFLSANPLGFPVDRPLHLWQITNNN 151
           V  V +SE    N S      KY S  L  N     V  PL +W++TN N
Sbjct: 166 VSFVRLSEKVPENASIGELSGKYKSDVLVCNATFSRVLNPLGVWKVTNAN 215


>Z78539-1|CAB01727.1|  350|Caenorhabditis elegans Hypothetical
           protein C31E10.1 protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 265 ERFVQGKRRQVWFSIPICQSSW 200
           ERF+ GK+  + F++PI   SW
Sbjct: 126 ERFLSGKKIYIIFAVPILCGSW 147


>AC024750-1|AAF60437.2|  240|Caenorhabditis elegans Hypothetical
           protein Y17G9A.2 protein.
          Length = 240

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 130 RCHDPSXPTPEIVVLTLLTNIISMFPLFNICYLI 29
           R  D S P+  +VVLTLL+  +  F  F   +L+
Sbjct: 6   RLDDSSCPSQTLVVLTLLSLFLCAFTAFGSAFLL 39


>U40409-9|AAA81390.3|  314|Caenorhabditis elegans Stomatin protein 2
           protein.
          Length = 314

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 292 GLYF*IPCTERFVQGKRRQVWFSIP 218
           G++F +PC E + +   R V FS+P
Sbjct: 119 GIFFVLPCIESYTKVDLRTVSFSVP 143


>Z81143-3|CAB03519.2|  276|Caenorhabditis elegans Hypothetical
           protein ZK265.4 protein.
          Length = 276

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 288 YISEFHAPNVSYRASEDKYGSRFLSANPLGFPVDRPLH 175
           +ISE+H P + Y      + + F +  P+ FP   P+H
Sbjct: 229 FISEYHPPFIPYYIPNQSFSNAF-NQYPMPFPY--PIH 263


>U50301-13|AAB37054.2|  549|Caenorhabditis elegans Hypothetical
           protein F20D6.11 protein.
          Length = 549

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = -1

Query: 318 VGGMPYVLMVYISEFHAPNVSYRASEDKYGSRFLSANPLGFPVDRPLHLWQITNNNIQKF 139
           +G  P    +  S     N  +   ++K+ +       +G  V  PL LW I + NIQ F
Sbjct: 377 IGVTPATKFLEGSGIKLDNRGFIEVDEKFRTNISYIFAMGDVVTAPLPLWDIDSINIQHF 436


>U29536-2|AAA68790.1|  759|Caenorhabditis elegans Brf (transcription
           factor) homologprotein 1 protein.
          Length = 759

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 249 PCTKRSVHGIQKYRPSIHT 305
           PCT  S+    KYRPS+ +
Sbjct: 391 PCTSNSLEKYDKYRPSLES 409


>AF077534-8|AAC26287.1|  312|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 11 protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 240 LRLPCTKRSVHGIQKYRPSIHTAYHQHD 323
           L+ P  +  +HG+ ++  SI  AY  HD
Sbjct: 186 LQKPSIQALIHGLNRHYYSIPIAYRTHD 213


>AF025457-11|AAB70970.1|  240|Caenorhabditis elegans Hypothetical
           protein C08E3.12 protein.
          Length = 240

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -2

Query: 284 FLNSMHRTFRTGQAKTSMVLDSYLPILLASQLIGHYTCGRLQ 159
           F++   +TF++ ++ T  VL  Y      +QL+  +  G+L+
Sbjct: 63  FIDCAEKTFKSAKSATRTVLAKYFSWRELAQLLPIFQAGKLE 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,397,757
Number of Sequences: 27780
Number of extensions: 142254
Number of successful extensions: 344
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)