Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_E18
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    38   0.001
SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    29   0.37 
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    28   0.84 
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    28   0.84 
SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar...    25   7.9  

>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = +1

Query: 346 DDLQVRLAAPYQLQPKPEAKDLGFGKYFTDHMLKIYFHRTLG 471
           D   +++    +L+P PE K L FG+ FTDHML + ++R  G
Sbjct: 14  DSSHIKVTNVKELKPLPEWKSLKFGENFTDHMLIMKWNREKG 55


>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 29.1 bits (62), Expect = 0.37
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -1

Query: 218 ELHHRTVCNLCWFSNIHLTKPVLRRI 141
           +LH   VC  CWFS   L  PV +RI
Sbjct: 240 KLHLVQVCLFCWFSFFILNHPVKQRI 265


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 27.9 bits (59), Expect = 0.84
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +1

Query: 109  IFINICVMKMAIRRNTGLVKWIFENQHKLQTVRWCSSSLRYKELEENAAQTQTEHV 276
            + +N   ++  IRR TG  ++ F N+  LQ   W  +    K L      T +  V
Sbjct: 996  VSVNSGFLEAVIRRPTGTTQYTFRNEASLQKFLWEENLTSSKALTRGLLCTPSSFV 1051


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 27.9 bits (59), Expect = 0.84
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +1

Query: 265 TEHVLAPTSAPAVKPRPHITSEVSFKYDDLQ 357
           T+ V+ P+ +   KP+PH++S+ S + + LQ
Sbjct: 241 TQEVVLPSFSSNAKPKPHLSSKSSSQGNTLQ 271


>SPCC1672.02c |sap1||switch-activating protein
           Sap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 277 LAPTSAPAVKPRPHITSEVSFKYDDLQVR 363
           L+P+S+PA   R H++ E   K   L VR
Sbjct: 18  LSPSSSPAKAQRTHLSLEEKIKLMRLVVR 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,846,169
Number of Sequences: 5004
Number of extensions: 34756
Number of successful extensions: 94
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)