Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_E18
         (476 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0630 - 20097672-20097772,20097983-20102012                       28   3.4  
12_02_0753 + 22806544-22806858,22807214-22807609,22807709-228078...    28   4.5  
01_06_0252 + 27889652-27892450                                         27   5.9  
07_03_0355 + 17133208-17133570                                         27   7.8  
03_06_0060 + 31341233-31342009,31342752-31342871,31343401-313435...    27   7.8  

>07_03_0630 - 20097672-20097772,20097983-20102012
          Length = 1376

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = +1

Query: 169 WIFENQHKLQTVRWCSSSLRYKELEENAAQTQTEHVLAP 285
           WI E  HK+   +W   ++      EN    + E++  P
Sbjct: 210 WITETLHKIDMSKWTQQAIEVSPHPENEKSNKVEYIRHP 248


>12_02_0753 +
           22806544-22806858,22807214-22807609,22807709-22807840,
           22807977-22808354
          Length = 406

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +1

Query: 130 MKMAIRRNTGLVKWIFENQHKLQ 198
           MK+  RRN   VKWI E   KLQ
Sbjct: 335 MKLVTRRNKCDVKWIEEQHQKLQ 357


>01_06_0252 + 27889652-27892450
          Length = 932

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = +1

Query: 283 PTSAPAVKPRPHITSEVSFKYDDLQVRLAAPYQLQPKPEAKDLGFGKYFTDHMLKIYFHR 462
           P +A A +     T + +F  D L+ RLAA Y+L+    A  + F       +     H 
Sbjct: 241 PEAAAAARRAIQTTPDGNFSCDTLKARLAASYRLE-YGRAHAVSFPSLHEPRLHVNQLHC 299

Query: 463 TLGG 474
           T GG
Sbjct: 300 TAGG 303


>07_03_0355 + 17133208-17133570
          Length = 120

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 217 SSLRYKELEENAAQTQTEHVLAPTSAPAVKPRPHITS 327
           SSLR  E+    + + +  V +PT+A A  PR H  +
Sbjct: 3   SSLRLAEISRKWSGSGSSKVTSPTAAAAACPRGHFAA 39


>03_06_0060 +
           31341233-31342009,31342752-31342871,31343401-31343517,
           31343615-31343704,31344279-31344386,31345124-31345306
          Length = 464

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +1

Query: 310 RPHITSEVSFKYDDLQVRLAAPYQLQPKPEAKDLGFGKYFTDHMLKIYFHRTL 468
           +P  +  VS  Y D   R ++ Y L  + + + LG  K   +H+L+I  +R L
Sbjct: 186 QPRGSVGVSASYGDQHGRSSSGYGLDSQVKRRWLGCSKVDCEHLLRILCNRHL 238


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,743,809
Number of Sequences: 37544
Number of extensions: 227463
Number of successful extensions: 628
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)