Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_E18
(476 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 24 0.73
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 24 0.73
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 23 1.3
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 22 2.9
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 22 2.9
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 22 2.9
EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. 22 3.9
EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. 22 3.9
EF032397-1|ABM97933.1| 200|Apis mellifera arginine kinase protein. 21 5.1
AF023619-1|AAC39040.1| 355|Apis mellifera arginine kinase protein. 21 5.1
DQ435329-1|ABD92644.1| 150|Apis mellifera OBP12 protein. 21 6.8
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 21 6.8
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 21 9.0
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 21 9.0
AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength rhodo... 21 9.0
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 24.2 bits (50), Expect = 0.73
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 350 TCK*GSLLLTNYNRSLRRKTLVSVNTLLIICLKSIFTEHLV 472
TC L +N ++RRKTL L+I C+ F LV
Sbjct: 221 TCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFLTVLV 261
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 24.2 bits (50), Expect = 0.73
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 383 YNRSLRRKTLVSVNTLLIICLKSIFTEHLV 472
+N +LRRKTL L+I C+ F LV
Sbjct: 228 FNITLRRKTLFYTVNLIIPCVGISFLSVLV 257
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 23.4 bits (48), Expect = 1.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 383 YNRSLRRKTLVSVNTLLIICLKSIFTEHLV 472
+N ++RRKTL L+I C+ F LV
Sbjct: 241 FNITMRRKTLFYTVNLIIPCVGITFLTVLV 270
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.2 bits (45), Expect = 2.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 350 TCK*GSLLLTNYNRSLRRKTLVSVNTLLIICL 445
TC L +N ++RRKTL ++I C+
Sbjct: 225 TCCDEPYLDITFNITMRRKTLFYTVNIIIPCM 256
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.2 bits (45), Expect = 2.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 350 TCK*GSLLLTNYNRSLRRKTLVSVNTLLIICL 445
TC L +N ++RRKTL ++I C+
Sbjct: 225 TCCDEPYLDITFNITMRRKTLFYTVNIIIPCM 256
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 22.2 bits (45), Expect = 2.9
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 383 YNRSLRRKTLVSVNTLLIICL 445
+N +LRRKTL L++ C+
Sbjct: 227 FNITLRRKTLFYTVNLIVPCV 247
>EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein.
Length = 686
Score = 21.8 bits (44), Expect = 3.9
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -3
Query: 105 FETLNCDTMYTY 70
FE++N D +YTY
Sbjct: 453 FESVNIDKLYTY 464
>EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein.
Length = 686
Score = 21.8 bits (44), Expect = 3.9
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -3
Query: 105 FETLNCDTMYTY 70
FE++N D +YTY
Sbjct: 453 FESVNIDKLYTY 464
>EF032397-1|ABM97933.1| 200|Apis mellifera arginine kinase protein.
Length = 200
Score = 21.4 bits (43), Expect = 5.1
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +1
Query: 211 CSSSLRYKELEENAAQT 261
C + +YKE+EE + T
Sbjct: 122 CLTEAQYKEMEEKVSST 138
>AF023619-1|AAC39040.1| 355|Apis mellifera arginine kinase protein.
Length = 355
Score = 21.4 bits (43), Expect = 5.1
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +1
Query: 211 CSSSLRYKELEENAAQT 261
C + +YKE+EE + T
Sbjct: 138 CLTEAQYKEMEEKVSST 154
>DQ435329-1|ABD92644.1| 150|Apis mellifera OBP12 protein.
Length = 150
Score = 21.0 bits (42), Expect = 6.8
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +1
Query: 418 GKYFTDHMLKIYFHR 462
G+Y D LK +FH+
Sbjct: 98 GQYHDDEDLKTFFHK 112
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.0 bits (42), Expect = 6.8
Identities = 11/56 (19%), Positives = 22/56 (39%)
Frame = +1
Query: 205 RWCSSSLRYKELEENAAQTQTEHVLAPTSAPAVKPRPHITSEVSFKYDDLQVRLAA 372
+W + ++ + TEH L S + R + S++ + + RL A
Sbjct: 284 KWPGCEVICEDYQAFLKHLNTEHTLDDRSTAQARVRMQVVSQLEIQLQKERDRLTA 339
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 20.6 bits (41), Expect = 9.0
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -1
Query: 35 YFVPLCIILY 6
YFVPL +I+Y
Sbjct: 225 YFVPLFLIIY 234
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 20.6 bits (41), Expect = 9.0
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -3
Query: 357 LQVIVLERYFRRNVWAW 307
L +IVL FR +V AW
Sbjct: 1009 LVIIVLAFVFRESVGAW 1025
>AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength
rhodopsin protein.
Length = 154
Score = 20.6 bits (41), Expect = 9.0
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -1
Query: 35 YFVPLCIILY 6
YFVPL +I+Y
Sbjct: 101 YFVPLFLIIY 110
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,572
Number of Sequences: 438
Number of extensions: 2489
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -