Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_E18
         (476 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g08670.1 68416.m01007 expressed protein                             30   0.93 
At5g67110.1 68418.m08461 basic helix-loop-helix (bHLH) family pr...    29   2.2  
At5g54250.2 68418.m06758 cyclic nucleotide-regulated ion channel...    27   6.6  
At5g54250.1 68418.m06757 cyclic nucleotide-regulated ion channel...    27   6.6  
At5g49665.1 68418.m06148 zinc finger (C3HC4-type RING finger) fa...    27   6.6  
At4g31490.1 68417.m04473 coatomer beta subunit, putative / beta-...    27   8.7  
At4g31480.1 68417.m04472 coatomer beta subunit, putative / beta-...    27   8.7  
At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family...    27   8.7  
At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family...    27   8.7  
At4g15400.1 68417.m02354 transferase family protein similar to d...    27   8.7  

>At3g08670.1 68416.m01007 expressed protein 
          Length = 567

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 20/53 (37%), Positives = 21/53 (39%)
 Frame = +2

Query: 167 NGYLKTSISYKRCDGAARHCVIRNWKKTRRKLKQNTC*PPRARPQSSHAHTLR 325
           N  L  S S    D A RH  IRN K     L   T  P   RP SS    +R
Sbjct: 430 NNGLGRSFSKSSLDMAIRHMDIRNGKTNGCALSTTTLFPQSIRPASSKIQPIR 482


>At5g67110.1 68418.m08461 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 210

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
 Frame = +1

Query: 172 IFENQHKLQTVRWCSSSLRYKELEENAAQTQTEHV-----LAPTSAPAVKPRPHITSEVS 336
           +  N +K         ++ Y  L++   Q QT  V     L P   P V P  H     +
Sbjct: 119 LIPNSNKTDKASMLDEAIEY--LKQLQLQVQTLAVMNGLGLNPMRLPQVPPPTHTRINET 176

Query: 337 FKYD-DLQVRLAAPYQLQPKPEAKDLGF 417
            + D +L+  LAAP+ L+P   ++ + F
Sbjct: 177 LEQDLNLETLLAAPHSLEPAKTSQGMCF 204


>At5g54250.2 68418.m06758 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC4) identical to
           cyclic nucleotide and calmodulin-regulated ion channel
           (cngc4) GI:4581203 from [Arabidopsis thaliana]
          Length = 694

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
 Frame = +1

Query: 166 KWIFENQHKLQTVRWCSSSLR-YKELEENAAQTQTEHVLAPTSAPAVKPRPHITSEVSFK 342
           ++ F N+   ++ R+ S   R +  +    A  + +H L  TS   ++PR  ++   S  
Sbjct: 611 RYTFVNEKVKRSARYYSPGWRTWAAVAVQLAWRRYKHRLTLTSLSFIRPRRPLSRCASLG 670

Query: 343 YDDLQVRLAAPYQLQPKPEAKD 408
            D L  RL A     PKP   D
Sbjct: 671 EDKL--RLYAAILTSPKPNPDD 690


>At5g54250.1 68418.m06757 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC4) identical to
           cyclic nucleotide and calmodulin-regulated ion channel
           (cngc4) GI:4581203 from [Arabidopsis thaliana]
          Length = 694

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
 Frame = +1

Query: 166 KWIFENQHKLQTVRWCSSSLR-YKELEENAAQTQTEHVLAPTSAPAVKPRPHITSEVSFK 342
           ++ F N+   ++ R+ S   R +  +    A  + +H L  TS   ++PR  ++   S  
Sbjct: 611 RYTFVNEKVKRSARYYSPGWRTWAAVAVQLAWRRYKHRLTLTSLSFIRPRRPLSRCASLG 670

Query: 343 YDDLQVRLAAPYQLQPKPEAKD 408
            D L  RL A     PKP   D
Sbjct: 671 EDKL--RLYAAILTSPKPNPDD 690


>At5g49665.1 68418.m06148 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 740

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = +1

Query: 238 LEENAAQTQTEHVLAPTSAPAVKPRPHITSEVSFKYDDLQVRLAAPYQLQPKPE 399
           L+++ +  Q + V+  TS+P  KPRP   S+ S  YDD +  L+  +   P+ +
Sbjct: 187 LDDSVSVIQEKRVVV-TSSPRAKPRPK-QSDYSRFYDDDEPLLSPRFVTIPEAD 238


>At4g31490.1 68417.m04473 coatomer beta subunit, putative /
           beta-coat protein, putative / beta-COP, putative similar
           to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
           from {Rattus norvegicus} SP|P23514, {Mus musculus}
           SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
           profile: PF01602 Adaptin N terminal region
          Length = 948

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +1

Query: 178 ENQHKLQTVRWCSSSLRYKELEENAAQTQTEHVLAPTSAPAVKPR 312
           E +  + T+  C   L +  + E +  T+T   + PTS+  V  R
Sbjct: 466 EVESGISTITQCLGELPFYSVSEESEPTETSKKIQPTSSAMVSSR 510


>At4g31480.1 68417.m04472 coatomer beta subunit, putative /
           beta-coat protein, putative / beta-COP, putative similar
           to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
           from {Rattus norvegicus} SP|P23514, {Mus musculus}
           SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
           profile: PF01602 Adaptin N terminal region
          Length = 971

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +1

Query: 178 ENQHKLQTVRWCSSSLRYKELEENAAQTQTEHVLAPTSAPAVKPR 312
           E +  + T+  C   L +  + E +  T+T   + PTS+  V  R
Sbjct: 489 EVESGISTITQCLGELPFYSVSEESEPTETSKKIQPTSSAMVSSR 533


>At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family
           protein
          Length = 438

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/55 (23%), Positives = 31/55 (56%)
 Frame = +1

Query: 241 EENAAQTQTEHVLAPTSAPAVKPRPHITSEVSFKYDDLQVRLAAPYQLQPKPEAK 405
           +E+++ + ++H     + P  +P+    SE +    + Q+ LA P+Q+ P+P+ +
Sbjct: 119 KESSSSSHSQHGEDRVATPVPEPKK---SENTSDAHNQQLALALPHQIAPQPQVQ 170


>At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family
           protein
          Length = 496

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/55 (23%), Positives = 31/55 (56%)
 Frame = +1

Query: 241 EENAAQTQTEHVLAPTSAPAVKPRPHITSEVSFKYDDLQVRLAAPYQLQPKPEAK 405
           +E+++ + ++H     + P  +P+    SE +    + Q+ LA P+Q+ P+P+ +
Sbjct: 177 KESSSSSHSQHGEDRVATPVPEPKK---SENTSDAHNQQLALALPHQIAPQPQVQ 228


>At4g15400.1 68417.m02354 transferase family protein similar to
           deacetylvindoline 4-O-acetyltransferase [Catharanthus
           roseus][GI:4091808][PMID:9681034], benzylalcohol
           acetyltransferase [Clarkia
           breweri][GI:6166336][PMID:10588064]
          Length = 435

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 176 LKTSISYKRCDGAARHCVIRNWKKTRRKLKQNT 274
           +  S+S+K CD A+    +++W  T  K K N+
Sbjct: 145 VSVSVSHKICDIASLVTFVKDWATTTAKGKSNS 177


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,511,590
Number of Sequences: 28952
Number of extensions: 180197
Number of successful extensions: 444
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)