Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_E16
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     27   2.5  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    26   4.4  
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|...    25   7.7  

>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 374 LVLKYLLNINIMQHYYIYLSHFNDYIFNF-LYYLNTY 267
           L++ YL     ++H Y+Y     D+  NF L++LN Y
Sbjct: 647 LLMYYLYGSPFLEHTYLYHFGRTDHRHNFSLHHLNLY 683


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
            Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -1

Query: 514  EAEATSPLRDELENE 470
            EAEATS L D +ENE
Sbjct: 1184 EAEATSQLEDRIENE 1198


>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/66 (18%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -3

Query: 458 SDNLDSMYLLVFNNXXXXXXXXXXXIKWLV-LKYLLNINIMQHYYIYLSHFNDYIFNFLY 282
           S N+D+ +  +F +               V L  L+++N  +   +      +Y+F++++
Sbjct: 231 SKNIDASFTSIFYSVFMLSIYYAIAKNGKVNLDMLIDVNARRFLPVAKQTMGNYVFSYVH 290

Query: 281 YLNTYK 264
           +LN ++
Sbjct: 291 HLNGFQ 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,149,820
Number of Sequences: 5004
Number of extensions: 40695
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)