Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_E16
         (565 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35372| Best HMM Match : SpoIIIAC (HMM E-Value=1.3)                  29   2.0  
SB_18244| Best HMM Match : Fukutin-related (HMM E-Value=3.7)           29   2.0  
SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_20246| Best HMM Match : RVT_1 (HMM E-Value=1.4e-30)                 27   8.0  
SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_21616| Best HMM Match : RVT_1 (HMM E-Value=0.00011)                 27   8.0  
SB_19905| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_17119| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_7017| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.0  

>SB_35372| Best HMM Match : SpoIIIAC (HMM E-Value=1.3)
          Length = 378

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -3

Query: 341 MQHYYIYLSHFNDYIFNFLYYLNTY 267
           M HY++Y++H++ Y+  +  Y+  Y
Sbjct: 22  MTHYHVYMTHYHVYMTRYHVYMTRY 46


>SB_18244| Best HMM Match : Fukutin-related (HMM E-Value=3.7)
          Length = 540

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -3

Query: 341 MQHYYIYLSHFNDYIFNFLYYLNTY 267
           M HY++Y++H++ Y+  +  Y+  Y
Sbjct: 22  MTHYHVYMTHYHVYMTRYHVYMTRY 46


>SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 831

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 187 SVPKKRILR*IRNFVCTSAYNRKV 116
           ++P+ R  R  R +VCT  YN+KV
Sbjct: 625 AIPQYRTQREARGYVCTMLYNKKV 648


>SB_20246| Best HMM Match : RVT_1 (HMM E-Value=1.4e-30)
          Length = 1191

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 556 FAWDIMHTKHEIYYEAEATSPLRDELE 476
           FAW     K EIY +A ATS   DE++
Sbjct: 59  FAWKKWKLKFEIYLKATATSTRPDEVK 85


>SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1571

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 556 FAWDIMHTKHEIYYEAEATSPLRDELE 476
           FAW     K EIY +A ATS   DE++
Sbjct: 23  FAWKKWKQKFEIYLKATATSTKPDEVK 49


>SB_21616| Best HMM Match : RVT_1 (HMM E-Value=0.00011)
          Length = 1380

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 556 FAWDIMHTKHEIYYEAEATSPLRDELE 476
           FAW     K EIY +A ATS   DE++
Sbjct: 23  FAWKKWKQKFEIYLKATATSTKPDEVK 49


>SB_19905| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 587

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 556 FAWDIMHTKHEIYYEAEATSPLRDELE 476
           FAW     K EIY +A ATS   DE++
Sbjct: 23  FAWKKWKQKFEIYLKATATSTKPDEVK 49


>SB_17119| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 618

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 556 FAWDIMHTKHEIYYEAEATSPLRDELE 476
           FAW     K EIY +A ATS   DE++
Sbjct: 23  FAWKKWKQKFEIYLKATATSTKPDEVK 49


>SB_7017| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1017

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 556 FAWDIMHTKHEIYYEAEATSPLRDELE 476
           FAW     K EIY +A ATS   DE++
Sbjct: 23  FAWKKWKQKFEIYLKATATSTKPDEVK 49


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,394,898
Number of Sequences: 59808
Number of extensions: 239503
Number of successful extensions: 416
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)