Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_E16
         (565 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09310.1 68417.m01539 SPla/RYanodine receptor (SPRY) domain-c...    27   6.5  
At4g09250.1 68417.m01532 SPla/RYanodine receptor (SPRY) domain-c...    27   6.5  
At4g09200.1 68417.m01522 SPla/RYanodine receptor (SPRY) domain-c...    27   6.5  
At1g71692.1 68414.m08279 MADS-box protein (AGL12) identical to G...    27   6.5  

>At4g09310.1 68417.m01539 SPla/RYanodine receptor (SPRY)
           domain-containing protein low similarity to RanBPM [Homo
           sapiens] GI:15080674; contains Pfam profile PF00622:
           SPRY domain
          Length = 397

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 61  FYFTRSSRVVNTIPFIVDRPFYYTL 135
           F+FT++  +V TIP    RP Y T+
Sbjct: 137 FFFTKNGTIVGTIPRQFRRPVYPTI 161


>At4g09250.1 68417.m01532 SPla/RYanodine receptor (SPRY)
           domain-containing protein low similarity to RanBPM [Homo
           sapiens] GI:15080674; contains Pfam profile PF00622:
           SPRY domain
          Length = 427

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 61  FYFTRSSRVVNTIPFIVDRPFYYTL 135
           F+FT++  +V TIP    RP Y T+
Sbjct: 215 FFFTKNGTIVGTIPRQFRRPVYPTI 239


>At4g09200.1 68417.m01522 SPla/RYanodine receptor (SPRY)
           domain-containing protein low similarity to RanBPM [Homo
           sapiens] GI:15080674; contains Pfam profile PF00622:
           SPRY domain
          Length = 397

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 61  FYFTRSSRVVNTIPFIVDRPFYYTL 135
           F+FT++  +V TIP    RP Y T+
Sbjct: 137 FFFTKNGTIVGTIPRQFRRPVYPTI 161


>At1g71692.1 68414.m08279 MADS-box protein (AGL12) identical to
           GB:AAC49085 GI:862650 from (Arabidopsis thaliana) (Plant
           Cell 7 (8), 1259-1269 (1995))
          Length = 211

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 412 GMLLNTNKYILSKLSE*KN 468
           G+L NTNKY+L K+ E  N
Sbjct: 166 GVLKNTNKYLLEKIEENNN 184


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,115,686
Number of Sequences: 28952
Number of extensions: 173519
Number of successful extensions: 253
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)