Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_E15
         (430 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33308| Best HMM Match : Ribosomal_L34e (HMM E-Value=9e-07)          56   9e-09
SB_51151| Best HMM Match : Vicilin_N (HMM E-Value=0.19)                29   1.2  
SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)                      29   2.2  
SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_36327| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  

>SB_33308| Best HMM Match : Ribosomal_L34e (HMM E-Value=9e-07)
          Length = 58

 Score = 56.4 bits (130), Expect = 9e-09
 Identities = 26/44 (59%), Positives = 31/44 (70%)
 Frame = +2

Query: 224 RPAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIV 355
           RP +   +   +KTV R YGG  C  CVK+RI+RAFLIEEQKIV
Sbjct: 2   RPMKLMHISKPQKTVSRAYGGSRCAACVKERIIRAFLIEEQKIV 45


>SB_51151| Best HMM Match : Vicilin_N (HMM E-Value=0.19)
          Length = 493

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 298 QMREAAHRQSFLDRRTEDRESPKSATGQHK 387
           QMRE     S L++R ED    KS  G H+
Sbjct: 142 QMREMREEMSALEKREEDMRKRKSEVGNHQ 171


>SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)
          Length = 429

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 77  RRLSYNTKSNQRRIVRTPGGRLVYQYVKKP 166
           RR++  T SN  R++RTP G+ ++  VK P
Sbjct: 159 RRITKTTNSNSTRLIRTP-GQSIHIKVKAP 187


>SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1422

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +1

Query: 238  FSSLLPQEDSEARLWRC--SLSQMREAAHRQSFLDRRTEDRESPK 366
            F  +L   D     WR   ++  +R+   RQ  L R  +DR SPK
Sbjct: 971  FPPMLDSADMHFETWRQRRAVEHLRQQHERQDILGRPHQDRSSPK 1015


>SB_36327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 409

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +2

Query: 203 LRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVKV 361
           ++G++  R  + S  C R   V +VY   +C +C +   V+   + E ++ KV
Sbjct: 201 VKGVRDVRVNKVSERCLRGACVYKVYERCVCTRCTRGACVQG--LREVRVYKV 251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,712,451
Number of Sequences: 59808
Number of extensions: 239041
Number of successful extensions: 784
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)