Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_E15
(430 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g26880.1 68414.m03278 60S ribosomal protein L34 (RPL34A) iden... 119 7e-28
At1g69620.1 68414.m08008 60S ribosomal protein L34 (RPL34B) simi... 117 3e-27
At3g28900.1 68416.m03607 60S ribosomal protein L34 (RPL34C) simi... 116 5e-27
At3g19880.1 68416.m02517 F-box family protein contains Pfam prof... 29 1.0
At2g36760.1 68415.m04509 UDP-glucoronosyl/UDP-glucosyl transfera... 28 3.1
At1g48740.1 68414.m05454 expressed protein 28 3.1
At2g17830.1 68415.m02065 F-box family protein contains Pfam doma... 27 4.1
At4g31877.1 68417.m04530 expressed protein 27 5.4
At3g52920.2 68416.m05833 expressed protein weak similarity to en... 27 5.4
At3g52920.1 68416.m05832 expressed protein weak similarity to en... 27 5.4
At3g20710.1 68416.m02621 F-box protein-related contains weak hit... 27 5.4
At1g33410.1 68414.m04136 expressed protein 27 5.4
At5g63330.1 68418.m07948 DNA-binding bromodomain-containing prot... 27 7.1
At5g52270.1 68418.m06487 vesicle transport protein-related simil... 27 7.1
At2g36780.1 68415.m04511 UDP-glucoronosyl/UDP-glucosyl transfera... 27 7.1
At2g36770.1 68415.m04510 UDP-glucoronosyl/UDP-glucosyl transfera... 26 9.4
At2g36750.1 68415.m04508 UDP-glucoronosyl/UDP-glucosyl transfera... 26 9.4
At1g32585.1 68414.m04021 VQ motif-containing protein-related con... 26 9.4
>At1g26880.1 68414.m03278 60S ribosomal protein L34 (RPL34A)
identical to GB:Q42351, location of EST 105E2T7,
gb|T22624
Length = 120
Score = 119 bits (287), Expect = 7e-28
Identities = 60/104 (57%), Positives = 74/104 (71%), Gaps = 2/104 (1%)
Frame = +2
Query: 53 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 232
MVQRL +R R SY TKSNQ RIV+TPGG+LVYQ KK P+C +++GI RP+
Sbjct: 1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60
Query: 233 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 358
E RSRL ++TV R YGGVL V++RI+RAFL+EEQKIVK
Sbjct: 61 EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVK 104
>At1g69620.1 68414.m08008 60S ribosomal protein L34 (RPL34B) similar
to SP:Q42351 from [Arabidopsis thaliana]
Length = 119
Score = 117 bits (282), Expect = 3e-27
Identities = 59/104 (56%), Positives = 72/104 (69%), Gaps = 2/104 (1%)
Frame = +2
Query: 53 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 232
MVQRL +R R SY TKSNQ RIV+TPGG+L YQ KK P+C +++GI RP
Sbjct: 1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
Query: 233 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 358
E RSRL ++TV R YGGVL V++RI+RAFL+EEQKIVK
Sbjct: 61 EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVK 104
>At3g28900.1 68416.m03607 60S ribosomal protein L34 (RPL34C) similar
to 60S ribosomal protein L34 GB:P41098 [Nicotiana
tabacum]
Length = 120
Score = 116 bits (280), Expect = 5e-27
Identities = 60/104 (57%), Positives = 72/104 (69%), Gaps = 2/104 (1%)
Frame = +2
Query: 53 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 232
MVQRL +R R SY TKSNQ RIV+TPGG+L YQ K P+C +++GI RPA
Sbjct: 1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60
Query: 233 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 358
E RSRL ++TV R YGGVL V++RIVRAFL+EEQKIVK
Sbjct: 61 EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVK 104
>At3g19880.1 68416.m02517 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 389
Score = 29.5 bits (63), Expect = 1.0
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = -1
Query: 163 FLNILVYQATSRSSYYSPLV*LCVVRQTSSECKPLHHFVAQIFLISSFTTK 11
F++I +YQ + +Y + LCV R+ SS + ++ Q I++ TTK
Sbjct: 77 FVSISMYQVETSQVFYCAGLLLCVTREKSSRLIIWNPYLGQTRWINTKTTK 127
>At2g36760.1 68415.m04509 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 496
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2
Query: 243 RERSAGLAGWIPRSLLLH*PHLGIFLGFLTY 151
+ERS + GW P+ L+L P +G GFLT+
Sbjct: 347 KERSLLIKGWSPQMLILSHPAVG---GFLTH 374
>At1g48740.1 68414.m05454 expressed protein
Length = 393
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 68 TFRRRLSYNTKSNQRRIVRTP-GGRLVYQ 151
+FR+ +S NTK + RRI+ P G LV+Q
Sbjct: 130 SFRKAISENTKESFRRIISEPFPGVLVFQ 158
>At2g17830.1 68415.m02065 F-box family protein contains Pfam domain,
PF00646: F-box domain
Length = 394
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2
Query: 195 LH*PHLGIFLGFLTYWYTKRPPGVRTILLWFDF 97
+H H G+ + TYWY G L+ FDF
Sbjct: 208 IHSYHRGLSVKGNTYWYATEKHGYVNFLICFDF 240
>At4g31877.1 68417.m04530 expressed protein
Length = 102
Score = 27.1 bits (57), Expect = 5.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -1
Query: 82 TSSECKPLHHFVAQIFLIS 26
+SS C P+ HF++ +F IS
Sbjct: 28 SSSNCVPISHFLSHVFFIS 46
>At3g52920.2 68416.m05833 expressed protein weak similarity to
enterophilin-2L [Cavia porcellus] GI:12718845; contains
Pfam profile PF04949: Family of unknown function
(DUF662)
Length = 177
Score = 27.1 bits (57), Expect = 5.4
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = +1
Query: 187 SVQE*TTRYPAREARRAFSSLLPQEDSEARLWRCSLSQMREAAHRQSFLDRRTEDRESPK 366
+ E TT+ P + +FSS + +ED E + R +LS R A R+ E RE K
Sbjct: 3 TTNEATTQPPQQMMSLSFSSQMSKEDEE--MARSALSAFR--AKEDEIEKRKMEVRERVK 58
Query: 367 SATGQ 381
+ G+
Sbjct: 59 AQLGR 63
>At3g52920.1 68416.m05832 expressed protein weak similarity to
enterophilin-2L [Cavia porcellus] GI:12718845; contains
Pfam profile PF04949: Family of unknown function
(DUF662)
Length = 180
Score = 27.1 bits (57), Expect = 5.4
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = +1
Query: 187 SVQE*TTRYPAREARRAFSSLLPQEDSEARLWRCSLSQMREAAHRQSFLDRRTEDRESPK 366
+ E TT+ P + +FSS + +ED E + R +LS R A R+ E RE K
Sbjct: 3 TTNEATTQPPQQMMSLSFSSQMSKEDEE--MARSALSAFR--AKEDEIEKRKMEVRERVK 58
Query: 367 SATGQ 381
+ G+
Sbjct: 59 AQLGR 63
>At3g20710.1 68416.m02621 F-box protein-related contains weak hit to
TIGRFAM TIGR01640 : F-box protein interaction domain;
contains weak hit to Pfam PF00646: F-box domain
Length = 362
Score = 27.1 bits (57), Expect = 5.4
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 177 GIFLGFLTYWYTKRPPGVRTILLWFDF 97
G+ L TYWY K + LL FDF
Sbjct: 197 GVSLNGDTYWYAKDKESIDWYLLCFDF 223
>At1g33410.1 68414.m04136 expressed protein
Length = 1459
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 190 VQE*TTRYPAREARRAFSSLLPQED 264
V E TTRYP ++ARRA L D
Sbjct: 1145 VPEETTRYPVKKARRAEEEQLRSND 1169
>At5g63330.1 68418.m07948 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 477
Score = 26.6 bits (56), Expect = 7.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 2 VRTFCCK*RY*KNLCYKMVQRLTFRRRLSYNTKSNQ 109
+R+ CK Y L + RLTF ++YN NQ
Sbjct: 208 IRSRLCKGEYSSPLDFAADVRLTFSNSIAYNPPGNQ 243
>At5g52270.1 68418.m06487 vesicle transport protein-related similar
to vesicle trafficking protein sec22b [Mus musculus]
GI:1907386
Length = 214
Score = 26.6 bits (56), Expect = 7.1
Identities = 13/58 (22%), Positives = 27/58 (46%)
Frame = +2
Query: 35 KNLCYKMVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLR 208
K +CY + ++ R+L +N N + + + + Q + KP R G+ ++R
Sbjct: 70 KKICYIALSDSSYPRKLLFNYLQNLNKELDKLDEKALIQKISKPYSFIRFGKIIGRIR 127
>At2g36780.1 68415.m04511 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 496
Score = 26.6 bits (56), Expect = 7.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 243 RERSAGLAGWIPRSLLLH*PHLGIFLGFLTY 151
+ER + GW P+ L+L P +G GFLT+
Sbjct: 347 KERGLLIKGWAPQVLILSHPSVG---GFLTH 374
>At2g36770.1 68415.m04510 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 496
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 243 RERSAGLAGWIPRSLLLH*PHLGIFLGFLTY 151
+ER + GW P+ L+L P +G GFLT+
Sbjct: 347 KERGLLIKGWSPQVLILSHPSVG---GFLTH 374
>At2g36750.1 68415.m04508 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 491
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 243 RERSAGLAGWIPRSLLLH*PHLGIFLGFLTY 151
+ER + GW P+ L+L P +G GFLT+
Sbjct: 342 KERGLLITGWSPQMLILTHPAVG---GFLTH 369
>At1g32585.1 68414.m04021 VQ motif-containing protein-related
contains weak similarity to Pfma:PF05678 VQ motif
Length = 220
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/54 (24%), Positives = 22/54 (40%)
Frame = +3
Query: 93 TQSQTKGE*YELLEVAWYTSMLRNLRRSRGVVSARVNYAVSSPRGPQSVLVSAT 254
TQS + +E +W+ + + + + S RV+Y P P S T
Sbjct: 142 TQSMPQSNGFEPFPSSWFNGSTQEMHGASSLQSTRVDYEYPLPLTPNFTFSSMT 195
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,747,612
Number of Sequences: 28952
Number of extensions: 160002
Number of successful extensions: 505
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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