Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_E14
(556 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 30 0.20
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 28 1.1
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo... 27 2.5
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 2.5
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 26 3.2
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 26 4.3
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 26 4.3
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 7.5
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 25 7.5
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 7.5
SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma... 25 7.5
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 25 9.9
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 25 9.9
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 25 9.9
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 25 9.9
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 25 9.9
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 30.3 bits (65), Expect = 0.20
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 2 RVFFFFFCKQTFISIINKKNVYDCFKINDSVSKVL 106
R F+ + K I ++ ++YDC+K N+SV VL
Sbjct: 44 RRFWTIWLKSLVIMVLLFTHIYDCYKTNESVWNVL 78
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 27.9 bits (59), Expect = 1.1
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +1
Query: 196 LARSGMR*IWYSNCTSESAGCGSFFIYFDKCLLEGFRHYYTVT 324
L R MR I N S++A C + FD LEG Y V+
Sbjct: 597 LVRMPMRTISEGNLDSDAAKCRIMYTKFDSICLEGIVGYQRVS 639
>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 26.6 bits (56), Expect = 2.5
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +2
Query: 443 LLVGLSLN-TSSRRPFSPALSNTDDKPSSLSG 535
L G +N T R F PAL N +KP ++G
Sbjct: 89 LFAGEHINFTEDRAVFHPALRNVSEKPMKVNG 120
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.6 bits (56), Expect = 2.5
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Frame = +2
Query: 278 LINASWKASDTTTLSPLTMFGAGSLNIFETPNLGIKGLRSNLLFISNFGISNFTFLLVGL 457
++N+S + ++ L+ T + S+ TP L S+ S+ +++ T +
Sbjct: 3101 IVNSSTPITSSSVLNSSTAITSSSILNSSTPITSSSILNSSTPITSSTVVNSSTPITSST 3160
Query: 458 SLNTSSRRPFSPAL-SNTDDKPSSLSGSRTNI 550
+LNTS+ S L S+T SS+ S T I
Sbjct: 3161 TLNTSTPITSSSVLNSSTAITSSSIVNSSTPI 3192
Score = 25.0 bits (52), Expect = 7.5
Identities = 19/83 (22%), Positives = 39/83 (46%)
Frame = +2
Query: 278 LINASWKASDTTTLSPLTMFGAGSLNIFETPNLGIKGLRSNLLFISNFGISNFTFLLVGL 457
++N+S + +T L+ T + S+ TP L ++ S+ +++ T +
Sbjct: 653 VLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTAITSST 712
Query: 458 SLNTSSRRPFSPALSNTDDKPSS 526
+LNTS+ S L+++ SS
Sbjct: 713 ALNTSTPITSSSVLNSSTPITSS 735
Score = 25.0 bits (52), Expect = 7.5
Identities = 19/83 (22%), Positives = 39/83 (46%)
Frame = +2
Query: 278 LINASWKASDTTTLSPLTMFGAGSLNIFETPNLGIKGLRSNLLFISNFGISNFTFLLVGL 457
++N+S + +T L+ T + S+ TP L ++ S+ +++ T +
Sbjct: 2813 VVNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSST 2872
Query: 458 SLNTSSRRPFSPALSNTDDKPSS 526
+LNTS+ S L+++ SS
Sbjct: 2873 ALNTSTSITSSSVLNSSTPITSS 2895
Score = 24.6 bits (51), Expect = 9.9
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Frame = +2
Query: 278 LINASWKASDTTTLSPLTMFGAGSLNIFETPNLGIKGLRSNLLFISNFGISNFTFLLVGL 457
++N+S + +T L+ T + S+ TP L S+ S+ +++ T +
Sbjct: 1061 VVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVLNSSTPITSSSVLNSSTPITSST 1120
Query: 458 SLNTSSRRPFSPAL-SNTDDKPSSLSGSRTNI 550
+NTS+ S AL ++T SS+ S T I
Sbjct: 1121 VVNTSTPITSSTALNTSTPITSSSVLNSSTPI 1152
Score = 24.6 bits (51), Expect = 9.9
Identities = 19/83 (22%), Positives = 39/83 (46%)
Frame = +2
Query: 278 LINASWKASDTTTLSPLTMFGAGSLNIFETPNLGIKGLRSNLLFISNFGISNFTFLLVGL 457
++N+S + +T L+ T + S+ TP L ++ S+ +++ T +
Sbjct: 1745 VVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSST 1804
Query: 458 SLNTSSRRPFSPALSNTDDKPSS 526
+LNTS+ S L+++ SS
Sbjct: 1805 ALNTSTPITSSSVLNSSTPITSS 1827
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/37 (29%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = +2
Query: 446 LVGLSLNTSSRRPFSPALSNTDDKPSSLS-GSRTNIR 553
L+G S+NTSS + + L++T + +S++ +R +++
Sbjct: 526 LIGSSINTSSHQHYGSTLNSTPHRRNSIALSNRAHVK 562
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 4.3
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +2
Query: 14 FFFCKQTFISIINKKNVYDCFKINDSVSKVLY*WV*VPAKIILSSYKMK 160
FF K + +I+ NV++ F + + + + Y W P L Y+ K
Sbjct: 98 FFAQKLKYADLISSDNVHEIFLPDSNAANIRYHWEWSPPSGKLLEYECK 146
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.8 bits (54), Expect = 4.3
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -2
Query: 423 PKFEIKSKLDLKPLMPKFGVSKIFNEPAPNIV 328
P+F K+ LD + +FG SK+ + P+ ++
Sbjct: 2200 PRFVFKNHLDCTVSLREFGSSKVLHLPSNELI 2231
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 25.0 bits (52), Expect = 7.5
Identities = 15/57 (26%), Positives = 31/57 (54%)
Frame = -2
Query: 513 SSVLDKAGEKGLLEDVFRLRPTNRKVKLEMPKFEIKSKLDLKPLMPKFGVSKIFNEP 343
S+V+D+ GEK + V +R K +L + +I ++++ L+ +G + + EP
Sbjct: 808 SNVMDEQGEKQKDDVVDMVRKITEKAQLFLSHEQITIRVEMLKLL-SYGSNVLAKEP 863
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +1
Query: 226 YSNCTSESAGCGSFFIYFDKCLLEGFRHYYTVT 324
Y NC S+ GS F ++ K HY + T
Sbjct: 571 YLNCNSKPMSLGSMFEHYRKLARRLISHYLSKT 603
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 25.0 bits (52), Expect = 7.5
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 458 SLNTSSRRPFSPALSNTDDKPSSLS-GSRTNIR 553
++NTS R FSP L+ T SL G+ T+++
Sbjct: 320 TINTSFDRKFSPKLTRTPSLTKSLDPGTPTSLK 352
>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 434
Score = 25.0 bits (52), Expect = 7.5
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -2
Query: 528 KLDGLSSVLDKAGEKGLLEDVFR-LRPTNRKVKLEMPKFEIKSKLDLKPL 382
K GLSSV+ +G+K ++D+ RP V ++ + SK+D++ L
Sbjct: 156 KAIGLSSVMFHSGQKNDVKDIANAFRPKGIHVLADLTQQVGLSKIDVQDL 205
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -1
Query: 94 DRIINFKTIIYIFFINDGNKRLFA 23
D I+NF T++ I+F + G+ ++A
Sbjct: 148 DMILNFTTLMTIYFASCGSYAIYA 171
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 24.6 bits (51), Expect = 9.9
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 268 FIYFDKCLLEGFRHYYTV 321
F + KCL E FR++Y +
Sbjct: 102 FTFLPKCLYEQFRYFYNM 119
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 24.6 bits (51), Expect = 9.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 385 RFKVQFAFYFKFWHLQLHFSISWPKSKHVFKETFLPCFV 501
RF V + + F+ L L +IS+P + + LPCF+
Sbjct: 362 RFAVALSKHIIFFDLDLLNNISFPIPRSINAIQQLPCFL 400
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 24.6 bits (51), Expect = 9.9
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -2
Query: 531 DKLDGLSSVLDKAGEKGLLEDVFRLRPTN 445
DK+ SSVL + KG+ E V LRP N
Sbjct: 408 DKVLYYSSVLTEFDPKGIQEVVESLRPNN 436
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 24.6 bits (51), Expect = 9.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 423 PKFEIKSKLDLKPLMPKFGVSKIFNEPAPN 334
PKF + S +D + P+ SKI N +P+
Sbjct: 230 PKFSVDSSVDDNAITPRKPFSKIPNRLSPS 259
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,314,027
Number of Sequences: 5004
Number of extensions: 48380
Number of successful extensions: 193
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -