Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_E14
         (556 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      61   7e-10
SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      58   4e-09
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      56   3e-08
SB_51995| Best HMM Match : Histone (HMM E-Value=3.7e-15)               29   1.9  
SB_14850| Best HMM Match : 7tm_1 (HMM E-Value=3.6e-30)                 29   2.6  
SB_46168| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)                 28   4.5  
SB_33643| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_5029| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.9  
SB_47865| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_22060| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42)           27   7.8  
SB_19791| Best HMM Match : Reprolysin (HMM E-Value=3.1)                27   7.8  

>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 60.9 bits (141), Expect = 7e-10
 Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 5/147 (3%)
 Frame = -2

Query: 549 MLVLLPDKLDGLSSVLDKAGEKGLLEDVFRLRPTN-RKVKLEMPKFEIKSKLDLKPLMPK 373
           M+VLLP+++DGL  +     ++ L E +  LR ++  +V++ +PKF +  +  L   +  
Sbjct: 229 MVVLLPNEVDGLGKLESSLNKETLQEAMTSLRNSHPEEVEVTLPKFTLTQEFSLGETLKG 288

Query: 372 FGVSKIFNEPAPNI--VKGDSVVVSEAFQEAFIKVDEEXXXXXXXXXXXXVPYSSHSRPR 199
            G S +F+    ++  +    +VVSE   +AF++V+EE            +  S    P 
Sbjct: 289 MGASDLFSPGKADLSGISAAPLVVSEVVHKAFVEVNEEGTIAAAATGVGIMLMSMPMNP- 347

Query: 198 QPLVFKVDHPFAYFILYED--KIIFAG 124
              VF  +HPF + I + D   ++F G
Sbjct: 348 ---VFYANHPFLFLIRHNDTGAVLFMG 371


>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 38/139 (27%), Positives = 72/139 (51%), Gaps = 7/139 (5%)
 Frame = -2

Query: 549 MLVLLPDKLDGLSSV-LDKAGEKGLLEDVFRLRPTNRKVKLEM--PKFEIKSKLDLKPLM 379
           M+++LPD+ +GL+    D   +K  + D+F    + R   +E+  PKF++ S+  L   +
Sbjct: 192 MVLVLPDETEGLARFEQDLTHDK--MTDIFNSVSSQRPADVEVYIPKFKMTSEFKLNEAL 249

Query: 378 PKFGVSKIFNEPAPNI----VKGDSVVVSEAFQEAFIKVDEEXXXXXXXXXXXXVPYSSH 211
            + G+ K+F++ A +     +  + + VS    +AF++V+EE            +   + 
Sbjct: 250 QELGMKKMFDQAAADFTGISLPPEHLFVSAVLHKAFVEVNEEGTEAAAATAAIMMMRCAI 309

Query: 210 SRPRQPLVFKVDHPFAYFI 154
            R  +PLVF+ DHPF + I
Sbjct: 310 MR--EPLVFRADHPFLFLI 326


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 5/147 (3%)
 Frame = -2

Query: 549 MLVLLPDKLDGLSSVLDKAGEKGLLEDVFRLRPTNRKVKLEMPKFEIKSKLDLKPLMPKF 370
           M+++LP++  G+ S L+K+ +  ++E   RL   N  V++ +PKF +  KL+L+ L+   
Sbjct: 199 MVIILPEEPSGIFS-LEKSIDVEIMEKWRRLM-INTTVEVSIPKFRLSQKLELRSLLQDL 256

Query: 369 GVSKIFNE---PAPNIVKGDSVVVSEAFQEAFIKVDEEXXXXXXXXXXXXVPYSSHSRPR 199
           GVS IF+        I     + VS A  +A I+V+E                S      
Sbjct: 257 GVSDIFDSRKADLSGISAAKGLYVSSAIHKAHIEVNERGTVAAATTGVVMAKRSLDMNE- 315

Query: 198 QPLVFKVDHPFAYFILYE--DKIIFAG 124
              VF  DHPF + I ++    I+F G
Sbjct: 316 ---VFYADHPFLFSIHHKPSSAILFLG 339


>SB_51995| Best HMM Match : Histone (HMM E-Value=3.7e-15)
          Length = 138

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 343 RLVEYFRNSKLGHQRFKVQFAFYFK 417
           RL  Y + S+   +RF++QFA+Y++
Sbjct: 76  RLAHYNKKSQSARERFRLQFAYYYQ 100


>SB_14850| Best HMM Match : 7tm_1 (HMM E-Value=3.6e-30)
          Length = 307

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
 Frame = +2

Query: 383 KGLRS-NLLFISNFGISNFTFLLVGLSLNT 469
           KG R+ + +FI N  IS+ TFL++ L++NT
Sbjct: 46  KGSRTVSDIFIMNLSISDLTFLILSLAVNT 75


>SB_46168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 471 LQGDLSPLLCPTPTINRRVCQEVGPTYE 554
           L G+L+  L    T+  RVCQ +G  YE
Sbjct: 64  LHGELTGWLSRAKTLEARVCQRMGQVYE 91


>SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)
          Length = 1373

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +2

Query: 386 GLRSNLLFISNFGISNFTFLLVGLSLNTSSRRPFSPALSNTDDKP 520
           GLR+   FI+      F   + GLS    S+ P  P +   D KP
Sbjct: 206 GLRAGFRFIAGMSFLGF---IAGLSFAPLSKHPMEPLIEKDDVKP 247


>SB_33643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 471 LQGDLSPLLCPTPTINRRVCQEVGPTYE 554
           L G+L+  L    T+  RVCQ +G  YE
Sbjct: 64  LHGELTGWLSRAKTLEARVCQRMGQVYE 91


>SB_5029| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +1

Query: 244 ESAGC---GSFFIYFDKCLLEGFRHYYTVTLDDVWCRLV-EYF 360
           E  GC   G   IY  K + +GF +  +   + +W ++V EYF
Sbjct: 2   EKTGCRYAGGISIYISKAIADGFTYMPSKNNNIIWLKIVKEYF 44


>SB_47865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1273

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -2

Query: 399 LDLKPLMPKFGVSKIFNEPAPNIVKGDSVVVSEAFQEAF 283
           +D KP +  F  +  F+E  P++ + +S  V+E F++AF
Sbjct: 636 VDSKPRVA-FDENVTFDERKPSVTQSESSAVTEDFEDAF 673


>SB_22060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 842

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
 Frame = -2

Query: 477 LEDVFRLRPTNRKVKLEMPKFEIKSKLDLKPLMPKFGVSKIFNEPAPN-----IVKGDSV 313
           L D  +  PTN+     + K   K +  +K L+P   VS I N P P+     +V G ++
Sbjct: 340 LNDESKEAPTNKPDTAVIGKLNNKLQEAVKLLVPTLKVSGILNPPRPSEKVRIVVPGAAI 399

Query: 312 VVSEA 298
             S+A
Sbjct: 400 ADSKA 404


>SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42)
          Length = 426

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = -2

Query: 510 SVLDKAGEKGLLEDVFRLRPTNRKVKLEMPKFEIKSKLDLKPLMPKFGVSKIFNEPAP 337
           S+LD  G    +    R R + +K     P     S L +KP+  + G+S I   P P
Sbjct: 192 SILDDIGHGVKIAPTDRRRSSAKKKPSPSPSAAPPSSLRVKPVSGRLGLSNIKPPPPP 249


>SB_19791| Best HMM Match : Reprolysin (HMM E-Value=3.1)
          Length = 616

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +1

Query: 340 CRLVEYFR--NSKLGHQRFKVQFAFYFKFWHLQLHFSISWP 456
           CRL+   R  N  +   +FK++ A + K WH  + F  + P
Sbjct: 563 CRLILDLRHVNKCIAKTKFKMEDAHFMKLWHHLIQFKPTRP 603


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,362,266
Number of Sequences: 59808
Number of extensions: 325994
Number of successful extensions: 709
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)