Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_E13
(468 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C) 157 3e-39
At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C) 157 3e-39
At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C) 157 3e-39
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi... 150 5e-37
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi... 150 5e-37
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 32 0.17
At1g58190.1 68414.m06605 leucine-rich repeat family protein cont... 32 0.17
At1g76780.1 68414.m08935 expressed protein ; expression supporte... 31 0.29
At2g02300.1 68415.m00168 F-box family protein / SKP1 interacting... 31 0.39
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 30 0.68
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 30 0.68
At5g65130.1 68418.m08193 AP2 domain-containing transcription fac... 30 0.90
At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative / th... 29 1.6
At3g10720.2 68416.m01291 pectinesterase, putative contains simil... 29 2.1
At3g52100.1 68416.m05717 PHD finger family protein contains Pfam... 28 2.7
At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containi... 27 8.4
At1g23770.1 68414.m02999 F-box family protein contains Pfam PF00... 27 8.4
>At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 157 bits (382), Expect = 3e-39
Identities = 70/117 (59%), Positives = 94/117 (80%)
Frame = +1
Query: 73 MDVNTALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNE 252
MDV+TAL+ ++ + +GG+V GLHE+AK ++KR A LCVLAE+C++ Y KLV+ALC +
Sbjct: 25 MDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCAD 84
Query: 253 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYL 423
H I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET AL+++K +L
Sbjct: 85 HSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHL 141
>At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 157 bits (382), Expect = 3e-39
Identities = 70/117 (59%), Positives = 94/117 (80%)
Frame = +1
Query: 73 MDVNTALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNE 252
MDV+TAL+ ++ + +GG+V GLHE+AK ++KR A LCVLAE+C++ Y KLV+ALC +
Sbjct: 25 MDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCAD 84
Query: 253 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYL 423
H I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET AL+++K +L
Sbjct: 85 HSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHL 141
>At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 157 bits (382), Expect = 3e-39
Identities = 70/117 (59%), Positives = 94/117 (80%)
Frame = +1
Query: 73 MDVNTALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNE 252
MDV+TAL+ ++ + +GG+V GLHE+AK ++KR A LCVLAE+C++ Y KLV+ALC +
Sbjct: 25 MDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCAD 84
Query: 253 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYL 423
H I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET AL+++K +L
Sbjct: 85 HSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHL 141
>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 150 bits (363), Expect = 5e-37
Identities = 72/135 (53%), Positives = 96/135 (71%), Gaps = 1/135 (0%)
Frame = +1
Query: 22 ADVDVEVP-ANPVLSGGAMDVNTALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLA 198
A V V P A P MD+ TAL+ L+ A +GG+V GLHE AK ++KR A L VLA
Sbjct: 7 APVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLA 66
Query: 199 ENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKD 378
E+C++ Y KLV+ALC +H++ L+ V + K LGEWAGLCKID +G ARK+VGCSC+V+KD
Sbjct: 67 EDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKD 126
Query: 379 FGEETPALDVLKDYL 423
FGEET AL ++ ++
Sbjct: 127 FGEETTALSIVNKHI 141
>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 150 bits (363), Expect = 5e-37
Identities = 72/135 (53%), Positives = 96/135 (71%), Gaps = 1/135 (0%)
Frame = +1
Query: 22 ADVDVEVP-ANPVLSGGAMDVNTALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLA 198
A V V P A P MD+ TAL+ L+ A +GG+V GLHE AK ++KR A L VLA
Sbjct: 7 APVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLA 66
Query: 199 ENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKD 378
E+C++ Y KLV+ALC +H++ L+ V + K LGEWAGLCKID +G ARK+VGCSC+V+KD
Sbjct: 67 EDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKD 126
Query: 379 FGEETPALDVLKDYL 423
FGEET AL ++ ++
Sbjct: 127 FGEETTALSIVNKHI 141
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 32.3 bits (70), Expect = 0.17
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +1
Query: 130 LVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAG 309
L G+ E K++ + Q LCV+A N + LC E +P V V + + L + AG
Sbjct: 51 LKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQ-AG 109
Query: 310 LCK 318
K
Sbjct: 110 ATK 112
>At1g58190.1 68414.m06605 leucine-rich repeat family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.2
[Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
Length = 1784
Score = 32.3 bits (70), Expect = 0.17
Identities = 23/81 (28%), Positives = 39/81 (48%)
Frame = +1
Query: 79 VNTALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQ 258
+NTA LKT ++HG + G + ++ R L L++N + V L N H
Sbjct: 1002 INTASS--LKTLILHGNNMEGTFPMKELINLRNLELLDLSKN----QFVGPVPDLANFHN 1055
Query: 259 IPLVKVDNNKKLGEWAGLCKI 321
+ + + +NK G GLC++
Sbjct: 1056 LQGLDMSDNKFSGSNKGLCQL 1076
>At1g76780.1 68414.m08935 expressed protein ; expression supported by
MPSS
Length = 1871
Score = 31.5 bits (68), Expect = 0.29
Identities = 23/85 (27%), Positives = 41/85 (48%)
Frame = +1
Query: 100 VLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVD 279
V+K G L +GL + K + + + L E+ ++ +KK+ + P+++
Sbjct: 1364 VVKLVAEDGSLRNGLEFSEK--ESTVSKMLKLDESKEKEEHKKIRKPTEERSNAPVIEKQ 1421
Query: 280 NNKKLGEWAGLCKIDKDGKARKIVG 354
NKK E KID+ GK ++I G
Sbjct: 1422 GNKKNAEEEMQDKIDRRGKNQEIKG 1446
>At2g02300.1 68415.m00168 F-box family protein / SKP1 interacting
partner 3-related contains similarity to SKP1
interacting partner 3 GI:10716951 from [Arabidopsis
thaliana]
Length = 284
Score = 31.1 bits (67), Expect = 0.39
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = -1
Query: 411 EYVQRWRLLTEILDNYARATDDFPS--LAVFVDFTETGPFAELLIVIDLNKWDLMFITES 238
E+ W +LTE ++ + + DD P LA+ FT T P L + + L F ++S
Sbjct: 15 EFCGCWEILTEFINGSSASFDDLPDDCLAIISSFTST-PRDAFLAALVSKSFGLQFNSDS 73
Query: 237 LNKLFV 220
+ + F+
Sbjct: 74 VWEKFL 79
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 30.3 bits (65), Expect = 0.68
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 136 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 297
+GL+ +++ +A L V+A + D + ALC + ++P V +LG
Sbjct: 128 YGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLG 181
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 30.3 bits (65), Expect = 0.68
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 136 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 297
+GL+ +++ +A L V+A + D + ALC + ++P V +LG
Sbjct: 129 YGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLG 182
>At5g65130.1 68418.m08193 AP2 domain-containing transcription
factor, putative similar to AP2 domain transcription
factor
Length = 277
Score = 29.9 bits (64), Expect = 0.90
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 232 VQALCNEHQIPLVKVDNNKKLGE-WAGLCKIDKDGKARKIVGC 357
++++CN +PL +++ K E +G K +K+ + +I GC
Sbjct: 187 IESICNSSDLPLPQIEKQNKTEEVLSGFSKPEKEPEFGEIYGC 229
>At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative /
threonine--tRNA ligase, putative similar to SP|O04630
Threonyl-tRNA synthetase, mitochondrial precursor (EC
6.1.1.3) (Threonine--tRNA ligase) (ThrRS) {Arabidopsis
thaliana}; contains Pfam profiles PF00587: tRNA
synthetase class II core domain (G, H, P, S and T),
PF03129: Anticodon binding domain, PF02824: TGS domain
Length = 458
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 163 LDKRQAVLCVLAENCDEAAYKKLVQALCNE 252
L RQA++C L+E+C ++Y K VQ NE
Sbjct: 355 LSPRQAIVCSLSEDC--SSYAKQVQKQINE 382
>At3g10720.2 68416.m01291 pectinesterase, putative contains
similarity to pectinesterase from Vitis vinifera
GI:15081598, Prunus persica SP|Q43062; contains Pfam
profile PF01095 pectinesterase
Length = 619
Score = 28.7 bits (61), Expect = 2.1
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -1
Query: 384 TEILDNYARATDDF-PSLAVFVDFTETGPFAELLIVIDLNKWDLMFITESLNKLFV 220
T I D A A ++ P FV + G + E IV+ +NK +LM + + +NK +
Sbjct: 314 TTITDAIAAAPNNTRPEDGYFVIYAREGVYEEY-IVVPINKKNLMLMGDGINKTII 368
>At3g52100.1 68416.m05717 PHD finger family protein contains Pfam
profile PF00628: PHD-finger
Length = 696
Score = 28.3 bits (60), Expect = 2.7
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = +3
Query: 69 CYGCEHSTPGSS*NGPYPRWISAWTSRGCQG--FGQEASCPMC 191
CY CE + PG NG RW T G F + CP+C
Sbjct: 263 CYSCESTVPG---NGQSLRWFLGHTCCDACGRLFVKGNYCPVC 302
>At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 603
Score = 26.6 bits (56), Expect = 8.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 283 NKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEE 390
NKK L K+ KD KA K+ GCS + + + E
Sbjct: 446 NKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHE 481
>At1g23770.1 68414.m02999 F-box family protein contains Pfam
PF00646: F-box domain; similar to F-box only protein 7
(SP:Q9Y3I1) {Homo sapiens} ; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 350
Score = 26.6 bits (56), Expect = 8.4
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = -1
Query: 210 VTVLSQYT*DSLPLVQSLGSLVKSMH*STVDKGRFKNFLECCVHIHSTTAQHGVSWYLDI 31
VTV Q L + +LG K +H +++DK RF ++ V Q S+Y ++
Sbjct: 119 VTVRFQNIGPRLVVYGTLGGSCKRVHMTSLDKSRFLPVIDLVVDTLKFEKQGSSSYYREV 178
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,094,620
Number of Sequences: 28952
Number of extensions: 203848
Number of successful extensions: 620
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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