Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_E10
         (502 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0408 - 18692176-18692278,18692590-18692669,18692764-186928...    32   0.30 
12_02_0081 + 13342692-13343514,13343520-13343821                       28   4.8  
01_07_0379 + 43177978-43178572,43178643-43178674                       28   4.8  
01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,650...    28   4.8  
04_03_0550 + 17054155-17054182,17054438-17054503,17054504-17056959     27   6.4  
08_01_0961 - 9622444-9622928,9623011-9623102,9623862-9624002,962...    27   8.5  

>02_03_0408 -
           18692176-18692278,18692590-18692669,18692764-18692890,
           18694016-18694051,18695832-18696085
          Length = 199

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
 Frame = +3

Query: 186 PANLVCPSCRATIVTKVNRKAT--------TKTHVIALLLCL--FLCWPCVCVPYCMDSC 335
           PA   C +C A  V+ +  + T        +K  + +++ C+  F+   C   P  MD  
Sbjct: 68  PAPFHCQACGAAAVSSLRSEDTIFFPVHGRSKPSLASVVACMMPFMMGVCFLCP-SMDCL 126

Query: 336 QNADHYCPNCNSYLGTYQQ*QSC 404
            +  HYCP+C   +  +++   C
Sbjct: 127 WHKYHYCPSCGEKVAEFKKSDPC 149


>12_02_0081 + 13342692-13343514,13343520-13343821
          Length = 374

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 396 VIVGMSPNTSCSWGSNGQRSGKNPYSTVHI 307
           +    SP  SCSW S  +  G+ P +T  +
Sbjct: 260 IATSWSPEGSCSWSSGDREPGRLPTTTFRV 289


>01_07_0379 + 43177978-43178572,43178643-43178674
          Length = 208

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 201 CPSCRATIVTKVNRKATTKTHV-IALLLCLFLCWPCVCVPY 320
           C SC+A ++ ++ R     T + + LLL L L + C C  +
Sbjct: 126 CDSCKAGVLEQLRRHWHNVTILNVVLLLLLILFYSCACCAF 166


>01_01_0832 -
           6500139-6500333,6500610-6500875,6501494-6501815,
           6501915-6502156,6502229-6502457,6503020-6503184,
           6503279-6503605,6504150-6504191,6504333-6504400,
           6504748-6504934,6506249-6506311,6506748-6506790,
           6506919-6507019,6507110-6507184,6507359-6507445,
           6507593-6507682,6507906-6507992,6508585-6508783,
           6509113-6509177,6509502-6509606,6509726-6509871,
           6510100-6510224,6510335-6510437,6510482-6510596,
           6510734-6510869,6511298-6511387,6511484-6511578,
           6511698-6511763,6511868-6511936,6512034-6512147,
           6512241-6512448,6512545-6512600,6512818-6513552
          Length = 1671

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 324 MDSCQNADHYCPNCNS 371
           M+  +NAD++CP+C S
Sbjct: 415 MEDLENADYFCPDCKS 430


>04_03_0550 + 17054155-17054182,17054438-17054503,17054504-17056959
          Length = 849

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +1

Query: 262 TSSRSSYVCFCAGRVYVYRTVWILARTLTITAPTATRIW 378
           T++   Y+     ++ V+ TVW+  R   IT P     W
Sbjct: 98  TNALGWYLAIWFNKIPVFTTVWVANRERPITVPRLNSTW 136


>08_01_0961 -
           9622444-9622928,9623011-9623102,9623862-9624002,
           9624460-9624506,9624581-9624639,9624780-9624940,
           9625021-9625196,9625284-9625355,9625820-9625879,
           9625997-9626191
          Length = 495

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 186 PANLVCPSCRATIVTKVNRKATT 254
           P ++ CP CR TIV+ V   +TT
Sbjct: 362 PGSIPCPLCRHTIVSFVRLTSTT 384


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,386,344
Number of Sequences: 37544
Number of extensions: 275605
Number of successful extensions: 750
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)