Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_E10
         (502 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35197| Best HMM Match : SAP (HMM E-Value=3.2)                       34   0.076
SB_43504| Best HMM Match : Urotensin_II (HMM E-Value=0.05)             31   0.53 
SB_31769| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_12923| Best HMM Match : zf-C3HC4 (HMM E-Value=1.1)                  29   1.6  
SB_3065| Best HMM Match : HD (HMM E-Value=0.018)                       29   1.6  
SB_44424| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_34539| Best HMM Match : SIR2 (HMM E-Value=1.7)                      29   2.2  
SB_38537| Best HMM Match : VWA (HMM E-Value=0)                         29   2.2  
SB_33453| Best HMM Match : BRF1 (HMM E-Value=1.4)                      29   2.2  
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)                   29   2.8  
SB_58060| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08)                 28   3.8  
SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)               28   3.8  
SB_43987| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_19269| Best HMM Match : Pkinase (HMM E-Value=2.4e-38)               27   6.6  
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)          27   8.7  
SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04)                 27   8.7  

>SB_35197| Best HMM Match : SAP (HMM E-Value=3.2)
          Length = 323

 Score = 33.9 bits (74), Expect = 0.076
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 212 SGHYSDQGQPQSYH*NPRHRAPPMFVFVLAVCMCTVL 322
           S H+  Q Q Q +  +PRHR PP+ + ++ +    ++
Sbjct: 103 SHHHHQQQQQQQHRHHPRHRRPPLIIIIIVIIYIIII 139


>SB_43504| Best HMM Match : Urotensin_II (HMM E-Value=0.05)
          Length = 444

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 472 CILSYNNYKITYKSHEKFI*LNVQDCYCWYVPKYE 368
           C+  Y  Y  TY  + +++  +  DCYC YV  Y+
Sbjct: 56  CMNGYCRYVSTYDCYSRYV--STYDCYCRYVSTYD 88



 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 460 YNNYKITYKSHEKFI*LNVQDCYCWYVPKYE 368
           Y+ Y  TY  + +++  +  DCYC YV  Y+
Sbjct: 70  YSRYVSTYDCYCRYV--STYDCYCRYVSTYD 98


>SB_31769| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 293

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -3

Query: 314 YTYTR-PAQKQT*EERDDVGFSGSFAVDLGHYSGPT*RAHQVSGIRTDRRDIHC 156
           +T+ R P  + T   R  VGF+  F V   H+S      H V G+ T +  +HC
Sbjct: 79  FTFHRHPVAQSTDSIRAKVGFNRGFHVWEIHWSTRQRGTHAVVGVATAKAPLHC 132


>SB_12923| Best HMM Match : zf-C3HC4 (HMM E-Value=1.1)
          Length = 166

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 186 PANLVCPSCRATIVTKVNRKATTKTHVIALLLCLF 290
           P    CP C+  IVT+ + K+   T+  +  LC+F
Sbjct: 42  PVYTTCPFCQEKIVTRTSFKSGKYTYWTSACLCIF 76


>SB_3065| Best HMM Match : HD (HMM E-Value=0.018)
          Length = 270

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
 Frame = -3

Query: 269 DDVGFSGSFAVDLGHYSGPT*RAHQVSGIRTDRRDIHCGD*K*RNRTYPRNASNNKYSKI 90
           DDV   G+F  D+GH  G      Q+  + TD+ DI  G    R+  +P + +N  +  +
Sbjct: 52  DDV-ILGAFFHDIGHLIGFDQGLSQMGDVGTDKHDI-VGQTYLRDLGFPDSVTNMVWGHV 109

Query: 89  R*PRFLQ*KLTQPHRGV----RATQXK 21
              R+L  K    H  V    R TQ K
Sbjct: 110 EAKRYLVFKDAGYHEKVHILARTTQLK 136


>SB_44424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1350

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 151 IKNDVIAPIPETPLIINTAKFVDLDFYNKN*HNHTVV 41
           +  D+ AP PE PL    + F  + + N+   NH  V
Sbjct: 621 VPEDLFAPYPEVPLFSVYSSFTGVQYANRTNENHMKV 657


>SB_34539| Best HMM Match : SIR2 (HMM E-Value=1.7)
          Length = 1384

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 151 IKNDVIAPIPETPLIINTAKFVDLDFYNKN*HNHTVV 41
           +  D+ AP PE PL    + F  + + N+   NH  V
Sbjct: 37  VPEDLFAPYPEVPLFSVYSSFTGVQYANRTNENHMKV 73


>SB_38537| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1174

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 135 ITSFLITTMNIAPVGPNPANLVCPSCRATIVTKVNRKA 248
           + SF  T ++ +       NLVCP+ R + +T++N K+
Sbjct: 14  VVSFYATLLSFSFAQAQTQNLVCPTVRTSALTQLNCKS 51


>SB_33453| Best HMM Match : BRF1 (HMM E-Value=1.4)
          Length = 412

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -1

Query: 409 NVQDCYCWYVPKYELQLGQ*WSAFWQESIQYGTHTHGQHKNKHRRS 272
           +V+ C+C Y P    Q GQ        + Q   HT  Q  +KH+RS
Sbjct: 107 DVRRCFCRYAPPLAEQEGQLIETEATGAPQKHHHTLNQSHSKHKRS 152


>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
          Length = 1103

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 282 CLFLCWPCVCVPYCMDSCQNADHYCPNCNSYL 377
           C+  C P VC P C D C     Y PN ++++
Sbjct: 704 CIAPC-PQVCAPACSDICCGFGAYAPNPDTHV 734


>SB_58060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 863

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 199 TRLAGFGPTGAIFIVVIKNDVIAPIPETPLIINTAKFV 86
           TR+ GF P  AI +  +  +   P  E PL + T K++
Sbjct: 764 TRMTGFAPKNAIKLRRVPLEAEKPPLEVPLEVGTKKYI 801


>SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08)
          Length = 1555

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +1

Query: 265  SSRSSYVCFCAGRVYVYRTVWILARTLTITAPTATRIWGHTNNNSL 402
            ++ +S+V  C GR     T++ + +T   T  TA   + + NNN +
Sbjct: 1494 NNNNSFVKLCQGRSTTTITIFTITKTPMTTITTALSRYVNNNNNDI 1539


>SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)
          Length = 474

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 300 PCVCVPYCMDSCQNADHYCPNCNSYLGTYQQ 392
           PC  V YC  +C +  +YCP C +++   Q+
Sbjct: 420 PCGHV-YCCQTCASNLYYCPLCKTFITFVQR 449


>SB_43987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 970

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -1

Query: 361 LGQ*WSAFWQESIQ-YGTHTHGQHKNKHRRSAMTW 260
           LG  W+  W  S + Y   TH  +  K RR A+ W
Sbjct: 69  LGPRWTG-WLNSFELYADDTHASNATKQRRRALLW 102


>SB_19269| Best HMM Match : Pkinase (HMM E-Value=2.4e-38)
          Length = 501

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 261 HVIALLLCLFLCWPCVCVPYCMDSCQNADHYCPNCNSYLG 380
           HV A+L+ L  CW C C    +D+       C +C    G
Sbjct: 393 HVDAMLVMLMRCWSCRCDGCHVDAMLVMSMRCWSCRCDAG 432


>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
          Length = 1039

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 282  CLFLCWPCVCVPYCMDSCQNADHYCP 359
            CL L W C  +  CMDS    +H CP
Sbjct: 960  CLPLTWLCDSITDCMDS--KDEHNCP 983


>SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04)
          Length = 1223

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
 Frame = +3

Query: 84   STNFAVFIIRGVSGIGAITSF----LITTMNIAPVGPNPA-NLVCPSCRATIVTKVNRKA 248
            ST     I R  +G+  +T+     L T  N  P G   A N   PS R      +NR+ 
Sbjct: 852  STGVPTLINRTPTGLRTVTNAAPTGLQTVTNAIPTGLRTASNNTQPSLRTVTEGFLNRQQ 911

Query: 249  TTKTHVIALL 278
            TTK     LL
Sbjct: 912  TTKKSTFTLL 921


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,436,733
Number of Sequences: 59808
Number of extensions: 359895
Number of successful extensions: 1003
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)