Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_E10
         (502 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13190.1 68418.m01510 expressed protein                             33   0.082
At2g35340.1 68415.m04333 RNA helicase, putative similar to ATP-d...    31   0.58 
At1g32490.1 68414.m04009 RNA helicase, putative similar to ATP-d...    29   2.3  
At4g39150.1 68417.m05545 DNAJ heat shock N-terminal domain-conta...    27   5.4  
At2g21510.1 68415.m02560 DNAJ heat shock N-terminal domain-conta...    27   5.4  
At1g09920.1 68414.m01116 TRAF-type zinc finger-related contains ...    27   5.4  
At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putat...    27   9.4  

>At5g13190.1 68418.m01510 expressed protein
          Length = 134

 Score = 33.5 bits (73), Expect = 0.082
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +3

Query: 186 PANLVCPSCRATIVTKVNRKATTKTHVIALLLCL--FLCWPCVCVPYCMDSCQNADHYCP 359
           PA   C  C  T +T +     +K  V A++ C+  F+   C   P  MD   N  H+CP
Sbjct: 48  PAPFNCLYCGNTGLTNLR----SKPGVAAVVACMMPFMLGFCFLCP-SMDCLWNKQHHCP 102

Query: 360 NCNSYLGTYQQ*QSC 404
            C + +  +++   C
Sbjct: 103 QCGNKVADFEKSDPC 117


>At2g35340.1 68415.m04333 RNA helicase, putative similar to
            ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
            contains Pfam profiles PF04408: Helicase associated
            domain (HA2), PF00271: Helicase conserved C-terminal
            domain
          Length = 1110

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -2

Query: 423  NSYD*TYKTVIVGMSPNTSCSWGSNGQRSGKNPYSTVHIHTAS 295
            N  D   K+++ G  P+T+    +   R+ K+P  TVHIH AS
Sbjct: 1005 NELDSIRKSIVAGFFPHTAKLQKNGSYRTVKHP-QTVHIHPAS 1046


>At1g32490.1 68414.m04009 RNA helicase, putative similar to
            ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
            contains Pfam profiles PF04408: Helicase associated
            domain (HA2), PF00271: Helicase conserved C-terminal
            domain
          Length = 1044

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 423  NSYD*TYKTVIVGMSPNTSCSWGSNGQRSGKNPYSTVHIHTAS 295
            N  D   K+++ G  P+T+    +   R+ K+P  TVHIH  S
Sbjct: 939  NELDSVRKSIVAGFFPHTAKLQKNGSYRTVKHP-QTVHIHPNS 980


>At4g39150.1 68417.m05545 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|P39101 CAJ1
           protein, Saccharomyces cerevisiae, PIR2:S48085; contains
           Pfam profile PF00226 DnaJ domain
          Length = 345

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 335 ARIHTVRYTYTRPAQKQT*EERD--DVGFSGSFAVDLGH 225
           A +HTV Y YTR A K+  +++    V F   +  D GH
Sbjct: 180 AMLHTVGYIYTRKAAKELGKDKRFMKVPFLAEWVRDKGH 218


>At2g21510.1 68415.m02560 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|P39101 CAJ1
           protein, Saccharomyces cerevisiae; contains Pfam profile
           PF00226 DnaJ domain
          Length = 346

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -3

Query: 335 ARIHTVRYTYTRPAQKQT*EERD--DVGFSGSFAVDLGHY 222
           A +HT+ Y YTR A K+  +++    V F   +  D GH+
Sbjct: 180 AMMHTIGYIYTRKAAKEIGKDKRYMKVPFLAEWVRDKGHH 219


>At1g09920.1 68414.m01116 TRAF-type zinc finger-related contains
           Pfam PF02176: TRAF-type zinc finger; similar to TNF
           receptor associated factor 4 (GI:7274404) [Mus musculus]
            (GI:7274404); similar to Cysteine rich motif Associated
           to Ring and Traf domains protein (mCART1)(GI:1041446)
           [Mus musculus]
          Length = 192

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
 Frame = +3

Query: 189 ANLVCPSCRATIVTKVNRKATTKTHVIALLLCLFLCWPCVCVPYC--MDSCQNADHYCPN 362
           A + C  C+ TI  ++      +     ++ C F  +P   V      + C N    C  
Sbjct: 59  APIACSMCKETIEREIFDSHKGEICPKRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCYQ 118

Query: 363 CNSYL 377
           CNSY+
Sbjct: 119 CNSYV 123


>At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putative
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 366

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 321 CMDSCQNADHYCPNCNSYLGTYQ 389
           C   C N  + CP C+  +G Y+
Sbjct: 77  CSSCCTNVSNKCPYCSLAIGNYR 99


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,837,352
Number of Sequences: 28952
Number of extensions: 221748
Number of successful extensions: 576
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)