Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_E09
         (462 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    27   1.1  
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    25   4.3  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    25   4.3  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    25   4.3  
SPCC777.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   5.6  
SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N...    24   9.8  

>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 108 YPYRFLSNSGECRAVSKIDLFIAVKSAMRNFDHRDAIRK 224
           YPY  L   G  +   K+D    V + +R+   RDAI K
Sbjct: 263 YPYEILGPQGTEKRTGKLDDDDLVYTTIRHMHMRDAIEK 301


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 414 TERHHCFYSVYYSSYRENP 358
           T R H FY+V Y++YR +P
Sbjct: 2   TLRDHHFYNVTYTAYRLSP 20


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 185 GFNSYEKIYFTNCSALARITEESI 114
           GFNS ++IY  N SA+A  +  +I
Sbjct: 711 GFNSTQRIYSGNLSAIASYSTRNI 734


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 321 LYVSGY*ISVIRRRLRKIEFLHSYPQSWRGRKSFL*RLCDQSSSL 187
           L ++G  +SV         F+H  P+S   RK    +LC QS S+
Sbjct: 189 LNMAGVPVSVDENSQTSFPFVHGQPESTMSRKP---KLCVQSKSM 230


>SPCC777.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -2

Query: 191 HCGFNSYEKIYFTNCSALARITEESIRIVINRVNSRLPSRYDVTN*RFY 45
           H     Y  ++F     L+   E S+R++I    SR+PS Y + N  FY
Sbjct: 97  HAFHEKYPDVHFARVY-LSSSLELSVRLLI----SRIPSYYFIDNQNFY 140


>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
           Nic1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 438 IGTVLVEPTERHHCFYSVYYSSYRENPF 355
           +G  LV+ T+    +Y+  YSS   NP+
Sbjct: 250 VGMCLVDTTDGALMYYAYSYSSGETNPY 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,660,149
Number of Sequences: 5004
Number of extensions: 31538
Number of successful extensions: 77
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)