SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_E09
         (462 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0684 - 5161218-5161427,5161509-5161616,5162217-5162390,516...    52   2e-07
07_01_0686 - 5184061-5184267,5184655-5184762,5185405-5185578,518...    48   5e-06
03_06_0354 - 33333634-33333840,33334106-33334213,33335384-333355...    48   5e-06
03_06_0352 - 33312443-33312652,33312747-33312854,33313224-333133...    40   0.001
12_02_0844 - 23609783-23609926,23610014-23610331,23610771-236109...    31   0.45 
06_01_0877 + 6728883-6729651,6729989-6730224,6730423-6730704,673...    31   0.45 
12_01_0949 - 9434951-9435131,9435555-9435682,9436493-9436666,943...    30   1.0  
05_03_0316 + 12242823-12242964,12243032-12243282,12243370-122435...    30   1.0  
02_04_0347 + 22193708-22193720,22194317-22194390,22195388-221961...    29   1.4  
01_04_0083 - 15838922-15839065,15839153-15839443,15839555-158396...    29   1.4  
07_01_0559 + 4151054-4151178,4151306-4153018,4153121-4153412,415...    29   1.8  
03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765...    29   2.4  
12_02_0210 - 15617770-15618453                                         28   3.2  
03_05_0761 - 27515441-27515650,27515967-27516074,27516666-275168...    28   3.2  
01_03_0114 - 12649104-12649141,12650137-12650245,12650500-126506...    28   3.2  
08_01_0217 + 1738321-1739104,1739683-1739915,1740002-1740292,174...    27   5.6  
04_03_0387 - 15251816-15251905,15251999-15252069,15252098-152523...    27   7.3  

>07_01_0684 -
           5161218-5161427,5161509-5161616,5162217-5162390,
           5162515-5162643,5162722-5163009,5163114-5163346,
           5164235-5165060
          Length = 655

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 4/126 (3%)
 Frame = +3

Query: 6   SFEDNFDYPLNIDIKPLVRDVIAGRKPTVDPINYYPYRFLSNSGECRA----VSKIDLFI 173
           + ED     LN DI   +  + A   P   P ++ P R+L  S + RA       ++LFI
Sbjct: 356 TLEDATGLSLNGDID--IESIFASSLPNSHP-SFAPERYLEMSEQWRAPPLPTEPVELFI 412

Query: 174 AVKSAMRNFDHRDAIRKTYGRAKIEGRNVKTLFFLGVDGSPKSNIQKRIDREMGEFRDII 353
            + SA  +F  R A+RK++     +  N+   FF+ ++G  K  +   + RE   F+DI+
Sbjct: 413 GILSAASHFAERMAVRKSWMMYTRKSTNIVARFFVALNG--KKEVNAELKREAEFFQDIV 470

Query: 354 QMDFRD 371
            + F D
Sbjct: 471 IVPFMD 476


>07_01_0686 -
           5184061-5184267,5184655-5184762,5185405-5185578,
           5185680-5185808,5185891-5186178,5186341-5186570,
           5186619-5187516
          Length = 677

 Score = 47.6 bits (108), Expect = 5e-06
 Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 4/137 (2%)
 Frame = +3

Query: 57  VRDVIAGRKPTVDPINYYPYRFLSNSGECRAV----SKIDLFIAVKSAMRNFDHRDAIRK 224
           V+ V AG  PT  P ++ P  +L  S   ++       +D+FI + S+  +F  R  +RK
Sbjct: 394 VQSVFAGSLPTTHP-SFSPQSYLDMSTVWQSSPLPNEPVDIFIGILSSGNHFAERMGVRK 452

Query: 225 TYGRAKIEGRNVKTLFFLGVDGSPKSNIQKRIDREMGEFRDIIQMDFRDXXXXXXXXXXD 404
           T+  A     NV   FF+ + G  + N++ + + E   F DI+ + F D          D
Sbjct: 453 TWMSAVRNSPNVVARFFVALHGRKEVNVELKKEAEF--FGDIVFVPFLD--------NYD 502

Query: 405 VVPLALRALCRCGFLLV 455
           +V L   A+C  G  +V
Sbjct: 503 LVVLKTLAICEYGVHVV 519


>03_06_0354 -
           33333634-33333840,33334106-33334213,33335384-33335557,
           33335637-33335765,33335858-33336145,33336257-33336489,
           33336607-33337435
          Length = 655

 Score = 47.6 bits (108), Expect = 5e-06
 Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 4/152 (2%)
 Frame = +3

Query: 12  EDNFDYPLNIDIKPLVRDVIAGRKPTVDPINYYPYRFLSNSGECRAV----SKIDLFIAV 179
           ED     LN D+   V+ V AG  PT  P ++ P + L      +A       I++FI +
Sbjct: 359 EDATGLSLNGDLD--VQSVFAGTLPTAHP-SFSPQKHLEMLPIWQAPPLPDEPIEIFIGI 415

Query: 180 KSAMRNFDHRDAIRKTYGRAKIEGRNVKTLFFLGVDGSPKSNIQKRIDREMGEFRDIIQM 359
            SA  +F  R A+RKT+  A  +  NV   FF+ ++   + N + + + E   F DI+ +
Sbjct: 416 LSAGNHFAERMAVRKTWMSAAQKSSNVVARFFVALNSRKEVNAELKKEAEF--FGDIVIV 473

Query: 360 DFRDXXXXXXXXXXDVVPLALRALCRCGFLLV 455
            F D          D+V L   A+C  G  +V
Sbjct: 474 PFMD--------SYDLVVLKTVAICEYGVRVV 497


>03_06_0352 -
           33312443-33312652,33312747-33312854,33313224-33313397,
           33313489-33313695,33313700-33313987,33314087-33314319,
           33314450-33315263
          Length = 677

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
 Frame = +3

Query: 6   SFEDNFDYPLNIDIKPLVRDVIAGRKPTVDPINYYPYRFLSNSGECRA----VSKIDLFI 173
           S ED     L  D+   +  ++AG  P   P ++ P R+L  S + +A       ++LFI
Sbjct: 352 SLEDATGLSLKGDLD--IESILAGHLPNSHP-SFAPQRYLEMSEQWKAPPLPTEPVELFI 408

Query: 174 AVKSAMRNFDHRDAIRKTYGRAKIEGRNVKTLFFLGV 284
            + SA  +F  R A+RK++     +  NV   FF+ +
Sbjct: 409 GILSAANHFAERMAVRKSWMIDTRKSSNVVARFFVAL 445


>12_02_0844 -
           23609783-23609926,23610014-23610331,23610771-23610926,
           23611068-23611318,23611384-23611530,23612450-23612501,
           23612628-23612763,23613507-23613538
          Length = 411

 Score = 31.1 bits (67), Expect = 0.45
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 60  RDVIAGRKPTVDPINYYPYRFL--SNSGECRAVSKIDLFIA 176
           R  + G  PT+ P NYY  RFL  S S E    S ++ FI+
Sbjct: 293 RGRVRGMGPTITPTNYYGRRFLNISGSNEGNGSSNVNGFIS 333


>06_01_0877 +
           6728883-6729651,6729989-6730224,6730423-6730704,
           6731297-6731335,6731719-6731826,6731873-6732220
          Length = 593

 Score = 31.1 bits (67), Expect = 0.45
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
 Frame = +3

Query: 42  DIKPLVRDVIAGRKPTVDPINYYPYRFLSNSGECRAVSKIDLFIAVKSAMRNFDHRDAIR 221
           DIK L   VIA   PT +   +     +  +        +DLFI + S   NF  R A+R
Sbjct: 350 DIKLL--SVIASGLPTTEDFEHVTDLEILKAPPVPMDKPLDLFIGIFSTANNFKRRMAVR 407

Query: 222 KTYGR-AKIEGRNVKTLFFLGV 284
           +T+ +   +        FF+G+
Sbjct: 408 RTWMQYDAVRSGKAAVRFFVGL 429


>12_01_0949 -
           9434951-9435131,9435555-9435682,9436493-9436666,
           9436978-9437193,9437376-9437522
          Length = 281

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 159 IDLFIAVKSAMRNFDHRDAIRKTYGRAKIEGRNVKTLFFLGV 284
           +D+FI + S+  +F  R  +RKT+  A     NV   FF+ +
Sbjct: 80  VDIFIGILSSGNHFAERMGVRKTWMSAVRNSPNVVARFFVAL 121


>05_03_0316 +
           12242823-12242964,12243032-12243282,12243370-12243573,
           12243660-12243752,12243828-12243926,12244006-12244308
          Length = 363

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 69  IAGRKPTVDPINYYPYRFLSNSG 137
           + G  PT+ P NYY  RFL+ SG
Sbjct: 301 VRGMGPTITPTNYYGGRFLNMSG 323


>02_04_0347 +
           22193708-22193720,22194317-22194390,22195388-22196132,
           22196203-22196417,22196505-22196786,22196870-22196998,
           22197088-22197267,22197538-22197645,22197888-22198094
          Length = 650

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 2/108 (1%)
 Frame = +3

Query: 54  LVRDVIAGRKPTVDPINYYPYRFLSNSGECRAVSKIDLFIAVKSAMRNFDHRDAIRKTYG 233
           LV  + +G   + D  N +    L +S        +DL I + S   NF  R AIR+T+ 
Sbjct: 367 LVSAIASGLPTSEDLENSFDLAMLKSSPIPEG-KDVDLLIGIFSTANNFKRRMAIRRTWM 425

Query: 234 R--AKIEGRNVKTLFFLGVDGSPKSNIQKRIDREMGEFRDIIQMDFRD 371
           +  A  EG  V   FF+G+       + K +  E   + DI  + F D
Sbjct: 426 QYDAVREGA-VVVRFFVGL--HTNLIVNKELWNEARTYGDIQVLPFVD 470


>01_04_0083 -
           15838922-15839065,15839153-15839443,15839555-15839653,
           15839733-15839825,15839913-15840116,15840209-15840459,
           15841045-15841096,15841527-15841625,15842222-15842299
          Length = 436

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 69  IAGRKPTVDPINYYPYRF--LSNSGECRAVSKIDLFIA 176
           + G  PT+ P NYY  RF  +S S E  + S ++ FI+
Sbjct: 321 VRGMGPTITPTNYYGGRFSNISGSSEGSSSSNVNGFIS 358


>07_01_0559 + 4151054-4151178,4151306-4153018,4153121-4153412,
            4154327-4154636,4155041-4155261
          Length = 886

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
 Frame = +3

Query: 90   VDPINYYPYRF-----LSNSGECRAVSKIDLFIAVKSAMRNFDHRDAIRKTYGRAKIEGR 254
            +DP+  YPYR+     + +  E  A++++   IA K+ +     R A  +  G      R
Sbjct: 800  LDPLRVYPYRYRAAVLMDSHKEKEAIAELTRAIAFKADLHLLHLRAAFHEHIGDVPSALR 859

Query: 255  NVKTLFFLGVDGSPKSNIQKRIDRE 329
            + +    L  +      +QKR++ +
Sbjct: 860  DCRAALSLDPNHQEMLELQKRVNSQ 884


>03_02_0774 + 11074508-11074880,11076270-11076370,11076453-11076509,
            11076596-11076690,11077480-11077579,11078272-11078330,
            11078874-11079001,11079362-11079440,11079708-11079795,
            11080490-11080590,11080822-11080900,11081740-11081850,
            11082655-11082750,11082885-11083007,11085750-11085947,
            11086071-11086172,11086570-11086634,11086888-11087008,
            11088540-11088697,11088823-11088973,11089414-11089521,
            11089939-11090031,11090285-11090321,11090659-11090906,
            11091396-11091542,11091929-11092099,11092166-11092175,
            11093360-11093505
          Length = 1114

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 246  EGRNVKTLFFLGVDG-SPKSNIQKRIDREMGEFRDIIQMD 362
            +G  V+TL  +GV   SPK    KR+ R +    D+I +D
Sbjct: 895  KGAEVRTLDLIGVQPPSPKPKTLKRLRRRLSADTDVINID 934


>12_02_0210 - 15617770-15618453
          Length = 227

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -1

Query: 399 CFYSVYYSSYRENPF-VLYP*IRPFPCLY 316
           CF S Y SS R NPF V+Y    P  C Y
Sbjct: 129 CFNSAYRSSLRSNPFQVVYGWPPPTLCCY 157


>03_05_0761 -
           27515441-27515650,27515967-27516074,27516666-27516839,
           27517185-27517469,27517688-27517920,27519422-27520139
          Length = 575

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
 Frame = +3

Query: 6   SFEDNFDYPLNIDIKPLVRDVIAGRKPTVDPINYYPYRFLSNSGECRAV----SKIDLFI 173
           S ED     +N D+   ++ ++AG  P   P N    R L    E +A       I+LFI
Sbjct: 320 SLEDAAILSVNGDVD--IQSIVAGSLPMAYPRN--AQRNLELLTELKAPPLPEEPIELFI 375

Query: 174 AVKSAMRNFDHRDAIRKTYGRAKIEGRNVKTLFFLGV 284
            + SA  +F  R A+R+++  +          FF+ +
Sbjct: 376 GILSAGSHFTERMAVRRSWMSSVRNSSGAMARFFVAL 412


>01_03_0114 -
           12649104-12649141,12650137-12650245,12650500-12650691,
           12650797-12650904,12650986-12651162,12652331-12652459,
           12653314-12653589,12653667-12653916,12654909-12655561
          Length = 643

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +3

Query: 156 KIDLFIAVKSAMRNFDHRDAIRKTYGRAK-IEGRNVKTLFFLGVDGSPKSNIQKRIDREM 332
           +I L I V S   NF  R A+R+T+ + + +    V   FF G+  + + N++  I +E 
Sbjct: 350 RIFLLIGVFSTGNNFKRRMALRRTWMQYEAVRLGEVAVRFFTGLHKNEQVNME--ILKEA 407

Query: 333 GEFRDIIQMDFRD 371
             + DI  M F D
Sbjct: 408 QMYGDIQFMPFVD 420


>08_01_0217 +
           1738321-1739104,1739683-1739915,1740002-1740292,
           1740524-1740616,1740912-1741040,1741522-1741695,
           1741883-1741990,1742073-1742279
          Length = 672

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 165 LFIAVKSAMRNFDHRDAIRKTYGR-AKIEGRNVKTLFFLGV 284
           LFI + SA  +F  R A+RKT+ + +++    V   FF+ +
Sbjct: 396 LFIGILSASNHFAERMAVRKTWMQSSEVRSSKVVARFFVAL 436


>04_03_0387 -
           15251816-15251905,15251999-15252069,15252098-15252323,
           15252344-15252496,15252570-15252656,15252745-15252948,
           15253038-15253159,15253354-15253507,15254329-15254434,
           15254507-15254617,15256468-15256622
          Length = 492

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 69  IAGRKPTVDPINYYPYRFLSNS 134
           + G  PT+ P NYY  RFL+ S
Sbjct: 402 VRGMGPTITPTNYYGGRFLNIS 423


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,125,942
Number of Sequences: 37544
Number of extensions: 181614
Number of successful extensions: 403
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -