Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_E09
(462 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1495| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 5e-06
SB_54275| Best HMM Match : Galactosyl_T (HMM E-Value=2.4e-20) 45 3e-05
SB_44966| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.009
SB_1848| Best HMM Match : Galactosyl_T (HMM E-Value=1.4e-26) 33 0.11
SB_52114| Best HMM Match : Galactosyl_T (HMM E-Value=3.5e-25) 33 0.11
SB_54195| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.20
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 1.4
SB_48591| Best HMM Match : Galactosyl_T (HMM E-Value=2.1e-33) 29 1.9
SB_39440| Best HMM Match : TPR_2 (HMM E-Value=6.3e-15) 29 2.5
SB_34528| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_22790| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_54139| Best HMM Match : DUF1353 (HMM E-Value=6.5) 27 10.0
>SB_1495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 461
Score = 47.6 bits (108), Expect = 5e-06
Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 8/109 (7%)
Frame = +3
Query: 69 IAGRKPTVDPINYYPYRFLSNSGEC---RAVSKIDLF--IAVKSAMRNFDHRDAIRKTYG 233
IA +PT+ ++Y P LSN +A DL+ I V S RNF+ R AIRK++G
Sbjct: 113 IATEEPTLKRVDYPP--LLSNKKLIVTPQACPNDDLYLLILVISTGRNFEARKAIRKSWG 170
Query: 234 RAKIEGRNVKT---LFFLGVDGSPKSNIQKRIDREMGEFRDIIQMDFRD 371
RA RNV T + + V GS + + R+ +E ++DI++ +F D
Sbjct: 171 RADTSKRNVTTPESVRVIFVVGSDEKS-DSRVTKEAKRYKDILRGNFDD 218
>SB_54275| Best HMM Match : Galactosyl_T (HMM E-Value=2.4e-20)
Length = 767
Score = 45.2 bits (102), Expect = 3e-05
Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 8/109 (7%)
Frame = +3
Query: 69 IAGRKPTVDPINYYPYRFLSNSGEC---RAVSKID--LFIAVKSAMRNFDHRDAIRKTYG 233
IA +PT+ ++Y P LSN +A D L I V S RNF+ R AIRK++G
Sbjct: 113 IATEEPTLKRVDYPP--LLSNKKLIVTPQACPNDDXYLLILVISTGRNFEARKAIRKSWG 170
Query: 234 RAKIEGRNVKT---LFFLGVDGSPKSNIQKRIDREMGEFRDIIQMDFRD 371
RA +NV T + + V GS + + R+ +E ++DI++ +F D
Sbjct: 171 RADTSQKNVTTPESVRVIFVVGSDEKS-DSRVTKEAKRYKDILRGNFDD 218
>SB_44966| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 413
Score = 36.7 bits (81), Expect = 0.009
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Frame = +3
Query: 138 ECRAVSKIDLFIAVKSAMRNFDHRDAIRKTYGRAKI---------EGRNVKTLFFLGVDG 290
ECR L I V S NF R+AIR ++G+ + +GR+ KT+F +G
Sbjct: 86 ECRRTPF--LLIEVHSRPSNFKRREAIRFSWGQPENVINQAGNFPQGRSWKTVFMIG--R 141
Query: 291 SPKSNIQKRIDREMGEFRDIIQMDFRD 371
S IQ +D E + DI+ DF D
Sbjct: 142 SQNKTIQSALDFESKKSSDIVFGDFED 168
>SB_1848| Best HMM Match : Galactosyl_T (HMM E-Value=1.4e-26)
Length = 308
Score = 33.1 bits (72), Expect = 0.11
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +3
Query: 153 SKIDLFIAVKSAMRNFDHRDAIRKTYGRAKIEGRNVKTLFFLGV-DGSPKSNIQKRIDRE 329
SK++L I V S + N R IR T+G + +T+F +G D + + DR
Sbjct: 61 SKVNLLILVSSYVGNAARRKEIRFTWGTDFLPSPRWRTVFLIGANDNQEEMRLMAAEDRL 120
Query: 330 MGEFRDIIQMDFRD 371
G D+I ++R+
Sbjct: 121 YG---DLITSEYRE 131
>SB_52114| Best HMM Match : Galactosyl_T (HMM E-Value=3.5e-25)
Length = 383
Score = 33.1 bits (72), Expect = 0.11
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +3
Query: 153 SKIDLFIAVKSAMRNFDHRDAIRKTYGRAKIEGRNVKTLFFLGV-DGSPKSNIQKRIDRE 329
SK++L I V S + N R IR T+G + +T+F +G D + + DR
Sbjct: 136 SKVNLLILVSSYVGNAARRKEIRFTWGTDFLPSLRWRTVFLIGANDNQEEMRLMAAEDRL 195
Query: 330 MGEFRDIIQMDFRD 371
G D+I ++R+
Sbjct: 196 YG---DLITSEYRE 206
>SB_54195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 32.3 bits (70), Expect = 0.20
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +3
Query: 153 SKIDLFIAVKSAMRNFDHRDAIRKTYGRAKIEGRNVKTLFFLGV-DGSPKSNIQKRIDRE 329
SK++L I V S + N R IR T+G + +T+F +G D + + DR
Sbjct: 65 SKVNLLILVSSYVGNAARRKEIRFTWGTDFLPTPRWRTVFLIGANDNQEEMRLMAAEDRL 124
Query: 330 MGEFRDIIQMDFRD 371
G D+I ++R+
Sbjct: 125 YG---DLITSEYRE 135
>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4002
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -1
Query: 393 YSVYYSSYRENPFVLYP*IRPFPCLYVSGY*ISVIRRRLRKIEFLHSYPQSWRGRKS 223
Y +YY + N +V YP + F Y ++ + +R + F+ YPQSW S
Sbjct: 2580 YKIYYGNNGRN-WVAYP--KVFAGNYDRNTVVNRVFKRAIRARFIRIYPQSWHKHMS 2633
>SB_48591| Best HMM Match : Galactosyl_T (HMM E-Value=2.1e-33)
Length = 336
Score = 29.1 bits (62), Expect = 1.9
Identities = 18/69 (26%), Positives = 27/69 (39%)
Frame = +3
Query: 165 LFIAVKSAMRNFDHRDAIRKTYGRAKIEGRNVKTLFFLGVDGSPKSNIQKRIDREMGEFR 344
L + V S RD IR T+G A V+ + S + I ++ E F
Sbjct: 76 LLVIVTSTPSARARRDLIRSTWGDANNTDITVRWKLVFNLGQSSSNEINSQVVTEASLFN 135
Query: 345 DIIQMDFRD 371
D+ +F D
Sbjct: 136 DVFMGEFTD 144
>SB_39440| Best HMM Match : TPR_2 (HMM E-Value=6.3e-15)
Length = 244
Score = 28.7 bits (61), Expect = 2.5
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 180 KSAMRNFDHRDAIRKTYGRAKIEGRNVKTLFFLGV 284
+ ++RN +++DA++ K+E N L F+GV
Sbjct: 14 RDSIRNKEYKDALKHCKAALKLEKNNYNALVFVGV 48
>SB_34528| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 301
Score = 27.5 bits (58), Expect = 5.7
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +3
Query: 33 LNIDIKPLVRDV-IAGRKPTVDPINYYPYRFLSNSGECRAVSKIDLFIAVKSAMRNFDHR 209
L+I+ K L RD I KP + +Y SGEC +K+ FI+
Sbjct: 5 LSINRKELFRDCSIWNIKPRENAKTFYCKCCYHVSGECNKENKVTSFISCDGLAAYLQKC 64
Query: 210 DAIRKTYGRAKIE 248
++ K R+KIE
Sbjct: 65 ASVGKKKMRSKIE 77
>SB_22790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 422
Score = 27.5 bits (58), Expect = 5.7
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +3
Query: 159 IDLFIAVKSAMRNFDHRDAIRKTYGRAKIEGRNVKTLFF---LGVDGSPKSNIQKRIDR 326
+DLFIA+ SA R AIR+T+ ++ FF +G++ K+N+ + D+
Sbjct: 68 LDLFIAIVSAPSRGVRRTAIRETWLSTIPYYPGIEARFFTDSIGLEDGIKANLTRERDQ 126
>SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 237
Score = 27.1 bits (57), Expect = 7.6
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -3
Query: 157 LLTARHSPELLRNLYG**LIGSTVGFLPAMTSRTRG--FISILRG 29
LL+ H P LL +G L+ T G P + S TRG +S++RG
Sbjct: 18 LLSLTHGPSLLSLTHGPPLLSLTRG--PPLLSLTRGPALLSLIRG 60
>SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 27.1 bits (57), Expect = 7.6
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +3
Query: 9 FEDNFDYPLNIDIKPLVRDVIAGRK 83
F+D F++P +D++P D +A R+
Sbjct: 214 FDDYFEFPWTLDMEPYTSDGVARRE 238
>SB_54139| Best HMM Match : DUF1353 (HMM E-Value=6.5)
Length = 138
Score = 26.6 bits (56), Expect = 10.0
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = +3
Query: 9 FEDNFDYPLNIDIKPLVRDVIAGRKPTVDPINYYPYRFLSNSGECRAVSKIDLFIAVKSA 188
FE +P + ++ ++ K +D N+Y Y S + E A+ K+ + +KSA
Sbjct: 49 FEIRVSHPDCVVTDTVLFRILEQEKANID--NHYSYNCKSENAELHAIFKVHRYEEIKSA 106
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,822,062
Number of Sequences: 59808
Number of extensions: 216409
Number of successful extensions: 486
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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