Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_E09
         (462 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62620.1 68418.m07859 galactosyltransferase family protein co...    48   3e-06
At1g74800.1 68414.m08666 galactosyltransferase family protein co...    42   3e-04
At4g21060.1 68417.m03045 galactosyltransferase family protein co...    38   0.002
At1g27120.1 68414.m03305 galactosyltransferase family protein co...    38   0.004
At1g26810.1 68414.m03267 galactosyltransferase family protein co...    35   0.023
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t...    31   0.50 
At5g58550.1 68418.m07333 tetratricopeptide repeat (TPR)-containi...    28   2.7  
At3g14225.1 68416.m01798 GDSL-motif lipase/hydrolase family prot...    28   3.5  
At5g22540.1 68418.m02630 expressed protein contains Pfam profile...    27   4.7  
At5g27320.1 68418.m03262 expressed protein similar to PrMC3 [Pin...    27   8.2  

>At5g62620.1 68418.m07859 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 681

 Score = 48.0 bits (109), Expect = 3e-06
 Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 5/151 (3%)
 Frame = +3

Query: 6   SFEDNFDYPLNIDIKPLVRDVIAGRKPTVDPINYYPYRFLSNSGECRAVS----KIDLFI 173
           + ED     +N DI   V  V AG  PT  P ++ P R L  S   +A S    ++D+FI
Sbjct: 380 TLEDATGLTINGDID--VHSVFAGSLPTSHP-SFSPQRHLELSSNWQAPSLPDEQVDMFI 436

Query: 174 AVKSAMRNFDHRDAIRKTYGRAK-IEGRNVKTLFFLGVDGSPKSNIQKRIDREMGEFRDI 350
            + SA  +F  R A+R+++ + K ++   V   FF+ +    + N++ + + E   F DI
Sbjct: 437 GILSAGNHFAERMAVRRSWMQHKLVKSSKVVARFFVALHSRKEVNVELKKEAEF--FGDI 494

Query: 351 IQMDFRDXXXXXXXXXXDVVPLALRALCRCG 443
           + + + D          D+V L   A+C  G
Sbjct: 495 VIVPYMD--------SYDLVVLKTVAICEYG 517


>At1g74800.1 68414.m08666 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 672

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 5/153 (3%)
 Frame = +3

Query: 6   SFEDNFDYPLNIDIKPLVRDVIAGRKPTVDPINYYPYRFLSNSGECRAV----SKIDLFI 173
           + ED     +N DI   V  V     PT  P ++ P R L  S   +A       +++FI
Sbjct: 371 TLEDATGLTVNGDID--VHSVFVASLPTSHP-SFAPQRHLELSKRWQAPVVPDGPVEIFI 427

Query: 174 AVKSAMRNFDHRDAIRKTY-GRAKIEGRNVKTLFFLGVDGSPKSNIQKRIDREMGEFRDI 350
            + SA  +F  R A+RK++     I    V   FF+ + G  + N++  + +E   F DI
Sbjct: 428 GILSAGNHFSERMAVRKSWMQHVLITSAKVVARFFVALHGRKEVNVE--LKKEAEYFGDI 485

Query: 351 IQMDFRDXXXXXXXXXXDVVPLALRALCRCGFL 449
           + + + D          D+V L   A+C  G L
Sbjct: 486 VLVPYMD--------SYDLVVLKTVAICEHGAL 510


>At4g21060.1 68417.m03045 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 741

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +3

Query: 165 LFIAVKSAMRNFDHRDAIRKTY-GRAKIEGRNVKTLFFLGVDGSPKSNIQKRIDREMGEF 341
           LF+ V SA  +F  R A+RKT+     I+  +V   FF+ +  +P+  +   + +E   F
Sbjct: 495 LFMGVLSATNHFSERMAVRKTWMQHPSIKSSDVVARFFVAL--NPRKEVNAMLKKEAEYF 552

Query: 342 RDIIQMDFRD 371
            DI+ + F D
Sbjct: 553 GDIVILPFMD 562


>At1g27120.1 68414.m03305 galactosyltransferase family protein
           contains Pfam profile:PF01762 galactosyltransferase
          Length = 673

 Score = 37.5 bits (83), Expect = 0.004
 Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 5/110 (4%)
 Frame = +3

Query: 57  VRDVIAGRKPTVDPINYYPYRFLSNSGECRAVS----KIDLFIAVKSAMRNFDHRDAIRK 224
           V  V A   P+ +P ++ P + L      +A S     ++LFI + SA  +F  R A+RK
Sbjct: 388 VHSVYAASLPSTNP-SFAPQKHLEMQRIWKAPSLPQKPVELFIGILSAGNHFAERMAVRK 446

Query: 225 TYGRAK-IEGRNVKTLFFLGVDGSPKSNIQKRIDREMGEFRDIIQMDFRD 371
           ++ + K +    V   FF+ +    + N+   + +E   F DI+ + + D
Sbjct: 447 SWMQQKLVRSSKVVARFFVALHARKEVNVD--LKKEAEYFGDIVIVPYMD 494


>At1g26810.1 68414.m03267 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 643

 Score = 35.1 bits (77), Expect = 0.023
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +3

Query: 159 IDLFIAVKSAMRNFDHRDAIRKTYGR-AKIEGRNVKTLFFLGVDGSPKSNIQKRIDREMG 335
           +DL I V S   NF  R A+R+T+ +   +    V   FF+G+  SP  N++  +  E  
Sbjct: 392 LDLVIGVFSTANNFKRRMAVRRTWMQYDDVRSGRVAVRFFVGLHKSPLVNLE--LWNEAR 449

Query: 336 EFRDIIQMDFRD 371
            + D+  M F D
Sbjct: 450 TYGDVQLMPFVD 461


>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
           SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
           (Immunoglobulin MU binding protein 2, SMUBP-2)
           [Mesocricetus auratus]
          Length = 961

 Score = 30.7 bits (66), Expect = 0.50
 Identities = 21/79 (26%), Positives = 33/79 (41%)
 Frame = +3

Query: 177 VKSAMRNFDHRDAIRKTYGRAKIEGRNVKTLFFLGVDGSPKSNIQKRIDREMGEFRDIIQ 356
           +K    +  HR+  RK      ++G        LG+D      IQ+RID    +   ++Q
Sbjct: 224 LKEIANSAQHREVARKAAQAKPVQG-------VLGMDSEKVKAIQERIDEFTSQMSQLLQ 276

Query: 357 MDFRDXXXXXXXXXXDVVP 413
           ++ RD          DVVP
Sbjct: 277 VE-RDTELEVTQEELDVVP 294


>At5g58550.1 68418.m07333 tetratricopeptide repeat (TPR)-containing
            protein contains Pfam profile PF00515 TPR Domain
          Length = 925

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
 Frame = +3

Query: 87   TVDPINYYPYRF-----LSNSGECRAVSKIDLFIAVKSAMRNFDHRDAIRKTYGRAKI 245
            T+DP+  YPYR+     + +  E  AV ++   IA +  ++    R A  +  G   +
Sbjct: 828  TLDPLRTYPYRYRAAVLMDDQRETEAVEELSKAIAFRPELQTLHLRAAFHEATGNLSL 885


>At3g14225.1 68416.m01798 GDSL-motif lipase/hydrolase family protein
           contains Pfam profile PF00657: Lipase/Acylhydrolase with
           GDSL-like motif
          Length = 377

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = -2

Query: 245 NLGAAVSLSYSVSVIKVPHCGFNSYEKIYFTNCSALARITEES-IRIVINRVNSRLPSRY 69
           NLG A +       + + H G N Y+  +F N S  +  T+E  I  VI    + +   Y
Sbjct: 157 NLGDAEARRVISKAVYLFHIGANDYQYPFFANTSTFSNTTKERFIDFVIGNTTTVIEELY 216


>At5g22540.1 68418.m02630 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 440

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -2

Query: 254 PTLNLGAAVSLSYSVSVIKVPHCGFNSYEKIYFTNCSALARITEES 117
           P  N  + + +SYS  V+ +P    + +    F NC A  ++  +S
Sbjct: 271 PRKNTDSILDISYSNGVLHIPPVVMDDFTASIFLNCVAFEQLYADS 316


>At5g27320.1 68418.m03262 expressed protein similar to PrMC3 [Pinus
           radiata] GI:5487873
          Length = 344

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +3

Query: 153 SKIDLFIAVKSAMRNFDHRDAIRKTYGRAKIEGRNVKTLFFLGVDGSPKSNIQKRID 323
           SK+ +F+A  S+  N  H  A+R    R  + G  +    F    G+ ++  +KR+D
Sbjct: 179 SKVRIFLAGDSSGGNIVHNVAVRAVESRIDVLGNILLNPMF---GGTERTESEKRLD 232


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,380,165
Number of Sequences: 28952
Number of extensions: 153976
Number of successful extensions: 385
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)