Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_E08
         (479 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0193 - 15492102-15492746,15492833-15492946,15493042-154933...    28   3.4  
04_03_0033 + 9936723-9937019,9937621-9937754,9938966-9939329           27   6.0  

>09_04_0193 -
           15492102-15492746,15492833-15492946,15493042-15493332,
           15493412-15493720,15493815-15494552
          Length = 698

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -2

Query: 133 AVILLTFIYLRDVII-FFSLLLFCNYFFLILFRIPDVKYNVYV 8
           A ++L F  LR +I+ F+S  LFC    L +F +P+ +  V+V
Sbjct: 491 ANLILLFFLLRKLILPFYSFTLFCVILPLTMF-VPEAELPVWV 532


>04_03_0033 + 9936723-9937019,9937621-9937754,9938966-9939329
          Length = 264

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = -2

Query: 190 ITSSIRYDSLFKI*QLTLGAVILLTFIYLRDV---IIFFSLLLFC 65
           +T S    ++FKI +L LG V L   +YL+ +   II  SLL+ C
Sbjct: 88  VTLSHNEGNIFKIIKLKLGIVKLEFIVYLKIICMPIILCSLLVTC 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,514,512
Number of Sequences: 37544
Number of extensions: 129993
Number of successful extensions: 199
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)