Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_E08
         (479 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34453| Best HMM Match : DUF1610 (HMM E-Value=5.5)                   28   4.6  
SB_42413| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_42110| Best HMM Match : Pox_A32 (HMM E-Value=0.034)                 27   8.0  

>SB_34453| Best HMM Match : DUF1610 (HMM E-Value=5.5)
          Length = 173

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
 Frame = -2

Query: 76  LLFCNYFF---LILFRIPDVKYNV 14
           LLFC  FF   LIL R PD K++V
Sbjct: 89  LLFCRIFFADFLILIRSPDTKWSV 112


>SB_42413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 639

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -2

Query: 178 IRYDSLFKI*QLTLGAVILLTFIYLRDVIIFFSLLLFC-NYF 56
           + Y+++F + +   GAVI+ TFI L     F +L + C NYF
Sbjct: 34  LHYETIFTLQERRHGAVIIHTFICL---YCFVALAILCDNYF 72


>SB_42110| Best HMM Match : Pox_A32 (HMM E-Value=0.034)
          Length = 720

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 114 NVNKMTAPSVNCYILKRLSYRILDVITHLHIFLIKLNKTRKS 239
           N+ ++  PS+   +LK L   + + I +LH+ L +   TR+S
Sbjct: 507 NLKEVPVPSLTNNLLKNLPKNLANSIKNLHVRLWQRGATRES 548


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,844,056
Number of Sequences: 59808
Number of extensions: 172277
Number of successful extensions: 262
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)