Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_E08
         (479 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024881-4|AAK71412.2|  314|Caenorhabditis elegans Serpentine re...    31   0.33 
U58754-8|AAK72082.1|  325|Caenorhabditis elegans Serpentine rece...    29   1.3  
Z71185-7|CAA94907.2|  520|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AY383563-2|AAQ96594.1|  533|Caenorhabditis elegans excitatory GA...    27   9.3  
AY383563-1|AAQ96595.1|  539|Caenorhabditis elegans excitatory GA...    27   9.3  
AF098990-1|AAC67448.3|  539|Caenorhabditis elegans Expulsion def...    27   9.3  

>AC024881-4|AAK71412.2|  314|Caenorhabditis elegans Serpentine
           receptor, class sx protein5 protein.
          Length = 314

 Score = 31.5 bits (68), Expect = 0.33
 Identities = 9/32 (28%), Positives = 22/32 (68%)
 Frame = -2

Query: 118 TFIYLRDVIIFFSLLLFCNYFFLILFRIPDVK 23
           T I++   ++FF L+ +  +F+++++R PD +
Sbjct: 240 TLIFMMSNLVFFVLISYSQFFYIVIWRSPDYR 271


>U58754-8|AAK72082.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 13 protein.
          Length = 325

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 20/79 (25%), Positives = 35/79 (44%)
 Frame = -2

Query: 310 SKLKITYKDKGICFHF*NSVLII*DFLVLFNFIKNICKCVITSSIRYDSLFKI*QLTLGA 131
           S L + Y   G C HF  +   +   L+L  F  ++   +++ S R   L+K        
Sbjct: 69  SDLSLAYISNGFCHHFGPTTCYVGYSLMLHCFSHSLWSLLLSFSYRCYILYKPAPTRPVL 128

Query: 130 VILLTFIYLRDVIIFFSLL 74
           V+++  IY   ++ F S L
Sbjct: 129 VLIIFLIYTPSLLQFVSFL 147


>Z71185-7|CAA94907.2|  520|Caenorhabditis elegans Hypothetical
           protein C35A5.5 protein.
          Length = 520

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/32 (31%), Positives = 22/32 (68%)
 Frame = -2

Query: 100 DVIIFFSLLLFCNYFFLILFRIPDVKYNVYVN 5
           +V+I+F L+L C YF + ++   + K N++++
Sbjct: 24  NVVIYFVLILICFYFIIPIYFPNNDKMNLWLS 55


>AY383563-2|AAQ96594.1|  533|Caenorhabditis elegans excitatory GABA
           receptor EXP-1A protein.
          Length = 533

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -2

Query: 115 FIYLRDVIIFFSLLLFCNYFFLI 47
           F ++  ++ FF  ++FC ++FLI
Sbjct: 486 FHWISQMLFFFGFVIFCLFYFLI 508


>AY383563-1|AAQ96595.1|  539|Caenorhabditis elegans excitatory GABA
           receptor EXP-1B protein.
          Length = 539

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -2

Query: 115 FIYLRDVIIFFSLLLFCNYFFLI 47
           F ++  ++ FF  ++FC ++FLI
Sbjct: 492 FHWISQMLFFFGFVIFCLFYFLI 514


>AF098990-1|AAC67448.3|  539|Caenorhabditis elegans Expulsion
           defective (defecation)protein 1 protein.
          Length = 539

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -2

Query: 115 FIYLRDVIIFFSLLLFCNYFFLI 47
           F ++  ++ FF  ++FC ++FLI
Sbjct: 492 FHWISQMLFFFGFVIFCLFYFLI 514


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,593,577
Number of Sequences: 27780
Number of extensions: 152826
Number of successful extensions: 347
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)