Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_E08
         (479 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05380.1 68418.m00580 prenylated rab acceptor (PRA1) family p...    29   2.1  
At4g31590.1 68417.m04487 glycosyl transferase family 2 protein s...    28   2.8  
At2g24630.1 68415.m02942 glycosyl transferase family 2 protein s...    27   6.5  
At4g01400.1 68417.m00180 pentatricopeptide (PPR) repeat-containi...    27   8.7  
At2g38360.1 68415.m04712 prenylated rab acceptor (PRA1) family p...    27   8.7  

>At5g05380.1 68418.m00580 prenylated rab acceptor (PRA1) family
           protein weak similarity to prenylated Rab acceptor 1
           (PRA1) [Homo sapiens] GI:4877285; contains Pfam profile
           PF03208: Prenylated rab acceptor (PRA1)
          Length = 217

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 160 FKI*QLTLGAVILLTFIYLRDVIIFFSLLLFCNYFFLILFRIPD 29
           FK+  +T+ +++L   +      +   L LFC + FL LFR  D
Sbjct: 79  FKVNYVTIVSLVLALSLLSHPFSLLVLLCLFCAWIFLYLFRPSD 122


>At4g31590.1 68417.m04487 glycosyl transferase family 2 protein
           similar to cellulose synthase from Agrobacterium
           tumeficiens [gi:710492] and Agrobacterium radiobacter
           [gi:710493]; contains Pfam glycosyl transferase, group 2
           family protein domain PF00535
          Length = 692

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -2

Query: 133 AVILLTFIYLRDVII-FFSLLLFCNYFFLILFRIPDVKYNVYV 8
           A ++L F  LR +I+ F+S  LFC    L +F +P+ +  V+V
Sbjct: 485 ANLILLFFLLRKLILPFYSFTLFCIILPLTMF-VPEAELPVWV 526


>At2g24630.1 68415.m02942 glycosyl transferase family 2 protein
           similar to cellulose synthase from Agrobacterium
           tumeficiens [gi:710492] and Agrobacterium radiobacter
           [gi:710493]; contains Pfam glycosyl transferase, group 2
           family protein domain PF00535
          Length = 690

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -2

Query: 133 AVILLTFIYLRDVII-FFSLLLFCNYFFLILFRIPDVKYNVYV 8
           A ++L F  LR +I+ F+S  LFC    + +F +P+ +  ++V
Sbjct: 485 ANLILLFFLLRKLILPFYSFTLFCVILPITMF-VPEAELPIWV 526


>At4g01400.1 68417.m00180 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1117

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 379 NISSLFRNNTFPYTNRKRFIFYSS 308
           + +++FR+ T P +   RF+FYSS
Sbjct: 8   DFAAVFRHLTSPLSTSSRFLFYSS 31


>At2g38360.1 68415.m04712 prenylated rab acceptor (PRA1) family
           protein weak similarity to prenylated Rab acceptor 1
           (PRA1) [Homo sapiens] GI:4877285; contains Pfam profile
           PF03208: Prenylated rab acceptor (PRA1)
          Length = 220

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -2

Query: 166 SLFKI*QLTLGAVILLTFIYLRDVIIFFSLLLFCNYFFLILFRIPD 29
           S FK+  LT+   I+   +      + F L L  ++ FL LFR  D
Sbjct: 84  SYFKVNYLTVATAIVGFSLVTHPFSLVFLLCLLASWLFLYLFRPTD 129


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,631,770
Number of Sequences: 28952
Number of extensions: 126011
Number of successful extensions: 235
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)