Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_E07
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    31   0.093
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    28   0.66 
SPBC2G2.03c |sbh1||translocon beta subunit Sbh1|Schizosaccharomy...    28   0.66 
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    26   3.5  

>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 31.1 bits (67), Expect = 0.093
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 101 VLHLWDLEVDRRVRLLQPHVQLAEALFVNENXXXXXXXPEI 223
           V+++WD+E  + VR L+ H +   AL  N+N        E+
Sbjct: 189 VIYIWDIESTKSVRSLKGHSERVAALAWNDNTLTSGGKDEV 229


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 28.3 bits (60), Expect = 0.66
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -2

Query: 460 HHNYTLSNAPPYFSL---FHNHPKKNSCSLIMLLC 365
           H  Y+L N PP+ +L   FHN P K +  L+ L+C
Sbjct: 501 HAIYSLVNRPPFATLGHVFHNTPMK-AIGLLNLIC 534


>SPBC2G2.03c |sbh1||translocon beta subunit Sbh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 102

 Score = 28.3 bits (60), Expect = 0.66
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 256 RFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHI 354
           + YTD++            +S+ FIASVF+LHI
Sbjct: 59  KLYTDEASGFKVDPVVVMVLSVGFIASVFLLHI 91


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 101 VLHLWDLEVDRRVRLLQPH 157
           ++HLWD+   RR++ ++ H
Sbjct: 528 LIHLWDIGTGRRIKTMRGH 546


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,872,331
Number of Sequences: 5004
Number of extensions: 34041
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)