Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_E06
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.0  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    28   1.0  
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.1  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    26   5.4  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   5.4  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    25   9.5  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
 Frame = -1

Query: 409 VPSLTSTPGIEAKQRDTS--LAACVNPARKRSTSTLGFSDKXXXXXXXXXXRTVSSKISA 236
           V S +S+P   +    TS  L+    P+   S+S+   S             + SS I +
Sbjct: 215 VVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIIS 274

Query: 235 FSNLATFSPSDCNALTISSLSSSKQRLMRARLLRSS 128
            S+ ++ SP+  ++   SS SSS      +  + SS
Sbjct: 275 SSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSS 310



 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -1

Query: 322 STSTLGFSDKXXXXXXXXXXRTVSSKISAFSNLATFSPSDCNALTISSLSSSKQR 158
           S+ST+  S             + S   S+FS+  + S S  ++ T++S SSS  R
Sbjct: 339 SSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVS-SSSSTSSSTLTSSSSSSSR 392


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 22/89 (24%), Positives = 43/89 (48%)
 Frame = -2

Query: 465 RQQRAAYHSICVQGVSLAEYPASRPLQE*KPNNVTLHWLRA*IQLGSDPRPHLGSVTSVV 286
           +Q ++++ +  V+GV      +S P ++ K N   L WLRA  +   +       +TS++
Sbjct: 64  KQHQSSHFATPVKGVE-----SSEPTEKKKRNKEAL-WLRARQKKWKEIFELCQKITSLL 117

Query: 285 GALVCEGDELSVPKYQLSPIWQRSLLQIV 199
           G  +      S+ K  L+ +W R   Q++
Sbjct: 118 GGTILIDVSFSMEKDVLTYLWMRVHYQVI 146


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 244 ISAFSNLATFSPSDCNALTISSLSSSKQRLMRARLLRSSIGFIT 113
           ++ F    + SP D   LT + LS S ++  R R ++ +  FIT
Sbjct: 307 LTIFDYYLSVSPKDITRLTNAILSLSMKQFERDRDIKKATDFIT 350


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 48  EIAYSLADDGPQPVSRTYQYRKVM 119
           E+  +LA+D P+ VS+ Y+Y  V+
Sbjct: 665 ELDLALAEDAPEFVSKVYRYLHVL 688


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
 Frame = -1

Query: 406 PSLTSTPGIEAKQRDTSLAACVNPARKRSTSTLGFSDKXXXXXXXXXXRTVSSKISAFSN 227
           PS +ST    +    +S ++  + +   S+S+   S             + SS  S+ S+
Sbjct: 144 PSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 203

Query: 226 LATFSP-SDCNALTISSLSSSKQRLMRARLLRSSIGFIT 113
            ++  P +   + + SS SSS      +    SS  FIT
Sbjct: 204 SSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFIT 242


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 84  PVSRTYQYRKVMKPMLERKRRARINRCLDELKELM 188
           P +R  + R   K + ERKRR  I    D+LK+ +
Sbjct: 328 PYTRNPELRTSHK-LAERKRRKEIKELFDDLKDAL 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,635,596
Number of Sequences: 5004
Number of extensions: 51834
Number of successful extensions: 142
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)