Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_E06
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0520 + 18286435-18287279,18287818-18288697 30 1.8
08_02_1092 + 24267737-24268641,24269005-24269884 28 5.6
07_03_0795 + 21567929-21568047,21569295-21569385,21569591-215697... 28 5.6
05_01_0143 - 944169-947273 28 5.6
04_04_0476 - 25508952-25509004,25509245-25509326,25509453-255096... 28 5.6
09_04_0432 + 17510820-17510996,17511076-17511546 28 7.4
01_05_0555 - 23231327-23231547,23232103-23232232,23233260-23233724 28 7.4
08_02_1467 - 27325755-27325882,27325990-27326332 27 9.8
01_06_0928 + 33085403-33089224 27 9.8
01_04_0031 + 15271193-15271342,15272134-15272182,15272894-15273294 27 9.8
>09_04_0520 + 18286435-18287279,18287818-18288697
Length = 574
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = -1
Query: 442 FNLCPRCVIS*VPSLTSTPGIEAKQRDTSLAACVNPA 332
F+L RC +S ++ PG++A QR+ + A CV PA
Sbjct: 323 FDLSLRCSVSPTVIKSANPGLDALQRNNA-AYCVQPA 358
>08_02_1092 + 24267737-24268641,24269005-24269884
Length = 594
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -1
Query: 442 FNLCPRCVIS*VPSLTSTPGIEAKQRDTSLAACVNPA 332
F+L RC +S ++ PG +A QR+ A CV PA
Sbjct: 343 FDLSLRCAVSPTVVKSANPGPDALQRNNQ-AYCVQPA 378
>07_03_0795 +
21567929-21568047,21569295-21569385,21569591-21569734,
21569849-21570064,21570315-21570506
Length = 253
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 491 WTGRRSIGTGSSALHIIQSVSKV 423
W + S G+G ALH++ +VSK+
Sbjct: 52 WIRKDSAGSGKKALHLVNTVSKL 74
>05_01_0143 - 944169-947273
Length = 1034
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 376 AKQRDTSLAACVNPARKRSTSTLGFSDK 293
AK++ SL ACVNPA ++ S + F K
Sbjct: 1007 AKKKKPSLLACVNPALQKQHSDMVFFTK 1034
>04_04_0476 -
25508952-25509004,25509245-25509326,25509453-25509611,
25509702-25509767,25509898-25510067,25510172-25510262,
25510331-25510410,25510887-25511003,25511092-25511218,
25511685-25511865,25511978-25512366,25512959-25513135,
25513306-25513500,25513844-25514031,25514192-25514500,
25514592-25514637
Length = 809
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = +3
Query: 57 YSLADDGPQPVSRTYQYRKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEK 236
Y+L DG V + K K +++KRR+R R + E++E M S +NV ++
Sbjct: 64 YALPGDGDLVVECEEEGEKGEK-RVKKKRRSRKKRKVKEMEEKMESKEDVSDDNVEDMQD 122
Query: 237 ADILE 251
+ +E
Sbjct: 123 GNDME 127
>09_04_0432 + 17510820-17510996,17511076-17511546
Length = 215
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +3
Query: 132 ERKRRARINRCLDELKELMVSA 197
ERKRR RIN LD L+ L+ SA
Sbjct: 36 ERKRRERINAHLDTLRGLVPSA 57
>01_05_0555 - 23231327-23231547,23232103-23232232,23233260-23233724
Length = 271
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 472 ILRRPVHRARLSPLLPRHLDT 534
+LRRP+H + PLL RHL +
Sbjct: 4 LLRRPLHTLPILPLLGRHLSS 24
>08_02_1467 - 27325755-27325882,27325990-27326332
Length = 156
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/33 (30%), Positives = 13/33 (39%)
Frame = +2
Query: 446 YAARCCRYRYSAGQSTEPGSLHCFLVIWIRDTV 544
Y RCC A + G C +W+ D V
Sbjct: 48 YPGRCCDSIIDAADGHDGGGTQCICRVWMEDAV 80
>01_06_0928 + 33085403-33089224
Length = 1273
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Frame = +3
Query: 18 TEHTMSTMSYEIAYSLADDGPQPVSRTYQYRKVMKPM---------LERKRRARINRCLD 170
TE + + Y+I +A+ G Q V KP+ L K R I++ L+
Sbjct: 46 TEDVLDELEYDILKRVAEKGAQASLMVASSNSVPKPLHAASNKMSNLRPKNRKLISK-LE 104
Query: 171 ELKELMVSA 197
ELKE++V A
Sbjct: 105 ELKEILVEA 113
>01_04_0031 + 15271193-15271342,15272134-15272182,15272894-15273294
Length = 199
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 437 IE*YAARCCRYRYSAGQSTEPGSL-HCFLVIWIRDTVAASFSDA 565
+E Y AR CR+RY AG L H + ++ T AS DA
Sbjct: 130 LEVYEARSCRFRYLAGDFISLADLSHFPMTHYLLATPHASVLDA 173
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,183,790
Number of Sequences: 37544
Number of extensions: 381466
Number of successful extensions: 1168
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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