Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_E06
(652 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38737| Best HMM Match : No HMM Matches (HMM E-Value=.) 85 6e-17
SB_53704| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-18) 78 7e-15
SB_38739| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 6e-13
SB_23535| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 4e-09
SB_38740| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 6e-09
SB_59476| Best HMM Match : HLH (HMM E-Value=1.2e-15) 56 2e-08
SB_47705| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 3e-08
SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_4125| Best HMM Match : HLH (HMM E-Value=5.7e-05) 31 1.1
SB_57929| Best HMM Match : K-box (HMM E-Value=4.3) 29 3.3
SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_39564| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14) 28 5.7
SB_53641| Best HMM Match : rve (HMM E-Value=7.9e-14) 28 7.6
SB_20589| Best HMM Match : Ribosomal_S15 (HMM E-Value=3.3) 28 7.6
>SB_38737| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 84.6 bits (200), Expect = 6e-17
Identities = 45/115 (39%), Positives = 67/115 (58%)
Frame = +3
Query: 108 RKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEKADILELTVXXXXXXXXX 287
+K KP +E+ RRARIN L+ELK L++ A++ + +K+EKADILE+TV
Sbjct: 22 KKSKKPQMEKLRRARINDSLNELKSLVLEAMKKDASRYSKMEKADILEMTVKYLRSAPEK 81
Query: 288 XXXXXNPSVDVDRFRAGFTHAANEVSRCLASIPGVDVRLGTQLMTHLGHRLNDMQ 452
+P+ + ++RAG+ A EV+R L S V +L TQL++HL R Q
Sbjct: 82 QSKISDPT-SLAKYRAGYNECAAEVTRFLLSSENVSDQLRTQLLSHLASRCYTQQ 135
>SB_53704| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-18)
Length = 722
Score = 77.8 bits (183), Expect = 7e-15
Identities = 43/107 (40%), Positives = 67/107 (62%), Gaps = 4/107 (3%)
Frame = +3
Query: 120 KPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEKADILELTVXXXXXXXXXXXXX 299
KPM+E++RRARIN+ L+ELK L++ A++ + +KLEKADILE+TV
Sbjct: 469 KPMMEKRRRARINQSLNELKILILEAMKKDTSCYSKLEKADILEMTVKYLRAMKTTQQLT 528
Query: 300 ----XNPSVDVDRFRAGFTHAANEVSRCLASIPGVDVRLGTQLMTHL 428
+PS V ++RAGF A EV+R + VD+++ T++++HL
Sbjct: 529 GIVPSDPS-SVAQYRAGFNECALEVTRYFMANDNVDLQMKTRILSHL 574
>SB_38739| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 213
Score = 71.3 bits (167), Expect = 6e-13
Identities = 43/107 (40%), Positives = 56/107 (52%)
Frame = +3
Query: 108 RKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEKADILELTVXXXXXXXXX 287
RK KPM+E+ RRARIN L+ELK L++ L + +K+EKADILE+TV
Sbjct: 20 RKAKKPMMEKLRRARINDSLNELKVLVLELLNKDASRYSKMEKADILEMTVGYLRAAQRI 79
Query: 288 XXXXXNPSVDVDRFRAGFTHAANEVSRCLASIPGVDVRLGTQLMTHL 428
+ D FRAGF A EVS L+ L L++HL
Sbjct: 80 EKRTQGSTPPSD-FRAGFNACAVEVSNRLSPADANTDNLRETLLSHL 125
>SB_23535| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 222
Score = 58.8 bits (136), Expect = 4e-09
Identities = 28/51 (54%), Positives = 37/51 (72%)
Frame = +3
Query: 108 RKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEKADILELTV 260
RK KP++E++RR RINR L+ELK L++ A + KLEKADILE+TV
Sbjct: 21 RKWSKPVMEKRRRERINRSLEELKRLVLEAQHRDCSRYTKLEKADILEMTV 71
>SB_38740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 58.0 bits (134), Expect = 6e-09
Identities = 28/51 (54%), Positives = 38/51 (74%)
Frame = +3
Query: 108 RKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEKADILELTV 260
R++MKP+ ER RR RIN L ELK L++SAL + +++EKADILE+TV
Sbjct: 23 RRIMKPITERLRRERINSSLKELKFLVLSALGQDVSRYSRMEKADILEMTV 73
>SB_59476| Best HMM Match : HLH (HMM E-Value=1.2e-15)
Length = 272
Score = 56.4 bits (130), Expect = 2e-08
Identities = 29/51 (56%), Positives = 39/51 (76%)
Frame = +3
Query: 108 RKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEKADILELTV 260
RK + ++E+KRR RINRCL EL+ L+ +AL+ EG +KLEKA+IL LTV
Sbjct: 12 RKRRRGLIEKKRRDRINRCLVELRRLVPTALEKEGS--SKLEKAEILHLTV 60
>SB_47705| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 55.6 bits (128), Expect = 3e-08
Identities = 32/55 (58%), Positives = 42/55 (76%), Gaps = 5/55 (9%)
Frame = +3
Query: 111 KVMKPMLERKRRARINRCLDELKELMVSAL-----QSEGENVAKLEKADILELTV 260
K KP+LER+RRARIN L+ELK L++S+L Q+E +N K+EKA+ILELTV
Sbjct: 20 KSSKPLLERQRRARINHSLNELKTLVLSSLYQNCPQAE-QNCEKMEKAEILELTV 73
>SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 37.5 bits (83), Expect = 0.009
Identities = 24/51 (47%), Positives = 32/51 (62%)
Frame = +3
Query: 108 RKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEKADILELTV 260
+K K ER+RR RIN+ L+ELK ++ L +NV KLE A ILE +V
Sbjct: 19 QKATKSYAERQRRTRINKSLEELK---LTVLGPSYQNV-KLEHAAILEFSV 65
>SB_4125| Best HMM Match : HLH (HMM E-Value=5.7e-05)
Length = 218
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +3
Query: 108 RKVMKPMLERKRRARINRCLDELKELMVSALQ 203
+K+ K +E+KRR+RIN L+EL+ L++ Q
Sbjct: 15 KKLSKLKMEKKRRSRINTSLNELRCLLLDHRQ 46
>SB_57929| Best HMM Match : K-box (HMM E-Value=4.3)
Length = 213
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +3
Query: 66 ADDGPQPVSRTYQYRKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKLE 233
A+D P PVS+ Q K + LE +R N +E ELM L+ +G K++
Sbjct: 120 AEDQPSPVSQQKQKIKYLSKPLEGVKRLLSNLFTEE--ELMRCTLKGKGRTSNKMQ 173
>SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6119
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 136 VKGAPASTVAWTNLKS*WLAHYNLKERTLPNWRKLIF 246
V G+P+ TV WT Y LKE+ N KL+F
Sbjct: 1117 VSGSPSPTVEWTKDLVKLRTSYRLKEKLDGNVAKLVF 1153
>SB_39564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 407 TQPHVHSRNRSQTT*HFIGCVRESSSEAIHVHT 309
TQ H HS + T R S++ A+H HT
Sbjct: 114 TQQHAHSTRKLHTYTQHAHLTRHSTTRALHTHT 146
>SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14)
Length = 659
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 464 GSSALHIIQSVSKVCH*LSTQPHVHS 387
GS+ L Q+ S +CH STQPH S
Sbjct: 64 GSTILTQPQTSSAICHTTSTQPHTSS 89
>SB_53641| Best HMM Match : rve (HMM E-Value=7.9e-14)
Length = 691
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -2
Query: 390 LQE*KPNNVTLHWLRA*IQLGSDPRPHLGSVTSVVGALVCEGDELSVPK 244
+QE + TLH LRA I + P L +V LV +G + +PK
Sbjct: 313 IQEETRKDTTLHSLRAVIAQVTTPILELSYELTVTDGLVLKGTRIVIPK 361
>SB_20589| Best HMM Match : Ribosomal_S15 (HMM E-Value=3.3)
Length = 99
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 438 ICVQGVSLAEYPASRPLQE*KPNNVTLHWL 349
+ V V + YPA+ P + K N V LHWL
Sbjct: 5 LTVIAVKVFPYPANVPYRMDKHNKVFLHWL 34
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,522,575
Number of Sequences: 59808
Number of extensions: 427803
Number of successful extensions: 1293
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1286
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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