Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_E06
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF020555-1|AAB68848.1|  173|Caenorhabditis elegans lin-22 protein.     50   1e-06
AC024817-57|AAK68522.1|  173|Caenorhabditis elegans Abnormal cel...    50   1e-06
U41279-6|AAK31423.1|  321|Caenorhabditis elegans Helix loop heli...    30   1.6  
U41279-4|AAK31421.1|  313|Caenorhabditis elegans Helix loop heli...    30   1.6  
U80815-10|AAO91678.1|  437|Caenorhabditis elegans Hypothetical p...    27   8.7  
U80815-9|AAV34785.1|  361|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U80815-8|AAB37997.1|  498|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U80815-7|AAO91677.1|  473|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U80815-6|AAO91675.1|  464|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U80815-5|AAO91676.1|  439|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U80815-4|AAO91674.1|  524|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U80815-3|AAK73899.1|  499|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AF020555-1|AAB68848.1|  173|Caenorhabditis elegans lin-22 protein.
          Length = 173

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 22/47 (46%), Positives = 33/47 (70%)
 Frame = +3

Query: 120 KPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEKADILELTV 260
           KP++E+KRRARIN+ L +LK++++          +K EKADILE+ V
Sbjct: 26  KPLMEKKRRARINKSLSQLKQILIQDEHKNSIQHSKWEKADILEMAV 72


>AC024817-57|AAK68522.1|  173|Caenorhabditis elegans Abnormal cell
           lineage protein 22 protein.
          Length = 173

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 22/47 (46%), Positives = 33/47 (70%)
 Frame = +3

Query: 120 KPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEKADILELTV 260
           KP++E+KRRARIN+ L +LK++++          +K EKADILE+ V
Sbjct: 26  KPLMEKKRRARINKSLSQLKQILIQDEHKNSIQHSKWEKADILEMAV 72


>U41279-6|AAK31423.1|  321|Caenorhabditis elegans Helix loop helix
           protein 27 protein.
          Length = 321

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 96  TYQYRKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEKADILELTV 260
           T   R+ +K   E+ RR + + C  ELK  +++      E   KLE+  ILE+ +
Sbjct: 142 TESERRKVKTEREKIRRKKQDDCYAELKFFILNKQMGSYEQRLKLERITILEIII 196


>U41279-4|AAK31421.1|  313|Caenorhabditis elegans Helix loop helix
           protein 25 protein.
          Length = 313

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 96  TYQYRKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEKADILELTV 260
           T   R+ +K   E+ RR + + C  ELK  +++      E   KLE+  ILE+ +
Sbjct: 134 TESERRKVKTEREKIRRKKQDDCYAELKFFILNKQMGSYEQRLKLERITILEIII 188


>U80815-10|AAO91678.1|  437|Caenorhabditis elegans Hypothetical
           protein W02C12.3g protein.
          Length = 437

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 21/61 (34%), Positives = 34/61 (55%)
 Frame = +3

Query: 69  DDGPQPVSRTYQYRKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEKADIL 248
           D+ P+   R  + +K +  M+ER+RR  IN   D +KEL     ++  E++ KL K  IL
Sbjct: 226 DNDPEDYYRDRR-KKDIHNMIERRRRYNIN---DRIKELGQMLPKNTSEDM-KLNKGTIL 280

Query: 249 E 251
           +
Sbjct: 281 K 281


>U80815-9|AAV34785.1|  361|Caenorhabditis elegans Hypothetical
           protein W02C12.3h protein.
          Length = 361

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 21/61 (34%), Positives = 34/61 (55%)
 Frame = +3

Query: 69  DDGPQPVSRTYQYRKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEKADIL 248
           D+ P+   R  + +K +  M+ER+RR  IN   D +KEL     ++  E++ KL K  IL
Sbjct: 89  DNDPEDYYRDRR-KKDIHNMIERRRRYNIN---DRIKELGQMLPKNTSEDM-KLNKGTIL 143

Query: 249 E 251
           +
Sbjct: 144 K 144


>U80815-8|AAB37997.1|  498|Caenorhabditis elegans Hypothetical
           protein W02C12.3a protein.
          Length = 498

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 21/61 (34%), Positives = 34/61 (55%)
 Frame = +3

Query: 69  DDGPQPVSRTYQYRKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEKADIL 248
           D+ P+   R  + +K +  M+ER+RR  IN   D +KEL     ++  E++ KL K  IL
Sbjct: 226 DNDPEDYYRDRR-KKDIHNMIERRRRYNIN---DRIKELGQMLPKNTSEDM-KLNKGTIL 280

Query: 249 E 251
           +
Sbjct: 281 K 281


>U80815-7|AAO91677.1|  473|Caenorhabditis elegans Hypothetical
           protein W02C12.3f protein.
          Length = 473

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 21/61 (34%), Positives = 34/61 (55%)
 Frame = +3

Query: 69  DDGPQPVSRTYQYRKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEKADIL 248
           D+ P+   R  + +K +  M+ER+RR  IN   D +KEL     ++  E++ KL K  IL
Sbjct: 201 DNDPEDYYRDRR-KKDIHNMIERRRRYNIN---DRIKELGQMLPKNTSEDM-KLNKGTIL 255

Query: 249 E 251
           +
Sbjct: 256 K 256


>U80815-6|AAO91675.1|  464|Caenorhabditis elegans Hypothetical
           protein W02C12.3d protein.
          Length = 464

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 21/61 (34%), Positives = 34/61 (55%)
 Frame = +3

Query: 69  DDGPQPVSRTYQYRKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEKADIL 248
           D+ P+   R  + +K +  M+ER+RR  IN   D +KEL     ++  E++ KL K  IL
Sbjct: 192 DNDPEDYYRDRR-KKDIHNMIERRRRYNIN---DRIKELGQMLPKNTSEDM-KLNKGTIL 246

Query: 249 E 251
           +
Sbjct: 247 K 247


>U80815-5|AAO91676.1|  439|Caenorhabditis elegans Hypothetical
           protein W02C12.3e protein.
          Length = 439

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 21/61 (34%), Positives = 34/61 (55%)
 Frame = +3

Query: 69  DDGPQPVSRTYQYRKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEKADIL 248
           D+ P+   R  + +K +  M+ER+RR  IN   D +KEL     ++  E++ KL K  IL
Sbjct: 167 DNDPEDYYRDRR-KKDIHNMIERRRRYNIN---DRIKELGQMLPKNTSEDM-KLNKGTIL 221

Query: 249 E 251
           +
Sbjct: 222 K 222


>U80815-4|AAO91674.1|  524|Caenorhabditis elegans Hypothetical
           protein W02C12.3c protein.
          Length = 524

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 21/61 (34%), Positives = 34/61 (55%)
 Frame = +3

Query: 69  DDGPQPVSRTYQYRKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEKADIL 248
           D+ P+   R  + +K +  M+ER+RR  IN   D +KEL     ++  E++ KL K  IL
Sbjct: 252 DNDPEDYYRDRR-KKDIHNMIERRRRYNIN---DRIKELGQMLPKNTSEDM-KLNKGTIL 306

Query: 249 E 251
           +
Sbjct: 307 K 307


>U80815-3|AAK73899.1|  499|Caenorhabditis elegans Hypothetical
           protein W02C12.3b protein.
          Length = 499

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 21/61 (34%), Positives = 34/61 (55%)
 Frame = +3

Query: 69  DDGPQPVSRTYQYRKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEKADIL 248
           D+ P+   R  + +K +  M+ER+RR  IN   D +KEL     ++  E++ KL K  IL
Sbjct: 227 DNDPEDYYRDRR-KKDIHNMIERRRRYNIN---DRIKELGQMLPKNTSEDM-KLNKGTIL 281

Query: 249 E 251
           +
Sbjct: 282 K 282


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,799,115
Number of Sequences: 27780
Number of extensions: 298358
Number of successful extensions: 883
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)