Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_E06
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g25310.1 68414.m03141 basic helix-loop-helix (bHLH) family pr...    29   3.5  
At2g07070.1 68415.m00807 AT hook motif-containing protein contai...    28   4.7  
At2g03730.1 68415.m00333 ACT domain-containing protein (ACR5) co...    28   4.7  
At5g27870.1 68418.m03343 pectinesterase family protein similar t...    28   6.2  
At3g56770.1 68416.m06314 basic helix-loop-helix (bHLH) family pr...    28   6.2  

>At1g25310.1 68414.m03141 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 145

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +3

Query: 126 MLERKRRARINRCLDELKELMVSALQSE 209
           +L++KRR RI R L+ LKE+  +  QS+
Sbjct: 73  LLKKKRRERIRRQLETLKEITPNCPQSD 100


>At2g07070.1 68415.m00807 AT hook motif-containing protein contains
           Pfam profile PF02178: AT hook motif
          Length = 501

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 107 ILISARDGLRAVVRERIRDLVRHCRHCV 24
           I++   DG  A+V    ++L  HCRHC+
Sbjct: 69  IVVEFPDGSEALVLLDYKNLKNHCRHCL 96


>At2g03730.1 68415.m00333 ACT domain-containing protein (ACR5)
           contains Pfam ACT domain PF01842
          Length = 456

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +3

Query: 18  TEHTMSTMSYEIAYSLAD-DGPQPVSRTYQYRKVMKPMLERKRRARINRCLDELKELMVS 194
           T  T++ M+Y ++++  D +GPQ     Y       P+     R R+ +CL    +  VS
Sbjct: 286 TVFTLTDMNYVVSHASIDAEGPQAYQEYYIRHTDGSPVKSEAERQRVIKCLKAAIQRRVS 345


>At5g27870.1 68418.m03343 pectinesterase family protein similar to
           pectinesterase (EC 3.1.1.11) from Salix gilgiana
           GI:6714532, Lycopersicon esculentum SP|Q43143, Phaseolus
           vulgaris SP|Q43111; contains Pfam profile PF01095
           pectinesterase
          Length = 732

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 22/114 (19%), Positives = 46/114 (40%)
 Frame = +3

Query: 111 KVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEKADILELTVXXXXXXXXXX 290
           K  + M+E ++  R    LD+ KELM  A+    ++  +L K +  ++            
Sbjct: 104 KKSQTMIELQKDPRAKMALDQCKELMDYAIGELSKSFEELGKFEFHKVDEALVKLRIWLS 163

Query: 291 XXXXNPSVDVDRFRAGFTHAANEVSRCLASIPGVDVRLGTQLMTHLGHRLNDMQ 452
               +    +D F+    +A   + + L +   +    G  ++T + + L  MQ
Sbjct: 164 ATISHEQTCLDGFQGTQGNAGETIKKALKTAVQL-THNGLAMVTEMSNYLGQMQ 216


>At3g56770.1 68416.m06314 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 230

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/19 (63%), Positives = 17/19 (89%)
 Frame = +3

Query: 132 ERKRRARINRCLDELKELM 188
           ERKRRARIN  L++L++L+
Sbjct: 53  ERKRRARINSHLNKLRKLL 71


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,075,614
Number of Sequences: 28952
Number of extensions: 283606
Number of successful extensions: 883
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)