Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_E05
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    31   0.12 
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    29   0.37 
SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyce...    27   1.5  
SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch...    27   1.5  
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc...    27   2.0  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    27   2.0  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    27   2.6  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    27   2.6  
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po...    27   2.6  
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.6  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    26   3.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   3.4  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    26   4.5  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    26   4.5  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    25   7.9  

>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 31.1 bits (67), Expect = 0.12
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 354 QRSGSVRTILTMIGSTSLDSFTISERLWPSTRSRNGAWSVTH 479
           Q S    T    + S  + S T+S   WP+T   +GAWS T+
Sbjct: 40  QNSERFSTASRSVKSGLISSSTVSAWTWPATLLSSGAWSYTY 81


>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 31/130 (23%), Positives = 58/130 (44%)
 Frame = +2

Query: 11  KWTRENMKIKPESPVSVMDPSLLLRPEEKYEDKPLEAFRDYTVDENDPIKMRVRKTYYDM 190
           K +R+ + + P SP +  +P   +  E  +  K +  F +Y+V++ D  + R RK    +
Sbjct: 188 KLSRDELYL-PISPNNAQEPKFSVLDE--WTKKMVANFEEYSVEDVDKRRERNRK----L 240

Query: 191 HTNMTVDFVKGKMDNWLKFNHFKSTIKDALIKLNDLVDESDPDTNLPNIVHAFQTAERIR 370
              + V+      D W +F   KS I+    +     DE      LP+ +H+ +  E + 
Sbjct: 241 SEPLLVNGRYRVRDRWAQFR--KSEIEKPY-RFTFFTDE------LPSTIHSHEMWELVH 291

Query: 371 EDHPDDDWFH 400
           +    +D FH
Sbjct: 292 DGQSFEDLFH 301


>SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 318

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +2

Query: 20  RENMKIKPESPVSVMDPSLLLRPEEKYEDKPLEAFRDYTVDENDPIKMRVR 172
           + N KI P    SV+DP+  +   E+     +   R   VD+N P+  R R
Sbjct: 147 KNNEKITPSMYDSVVDPAPPMPDHEQDVKSEVAKLRSEIVDQNLPLFYRYR 197


>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 287

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
 Frame = +2

Query: 23  ENMK--IKPESPVSVMDPSLLLRPEEKYEDKPLEAFRDYTVDENDPIKMR---VRKTYYD 187
           EN+K  IK   PV+   P  L   +E+YE      F D    EN  IK R   + + +Y+
Sbjct: 54  ENLKKNIKVLVPVNEK-PQKLDGKQEEYEIIVKLFFLD---GENIDIKKREETLSQVFYN 109

Query: 188 MHTNMTVDFVKGKMDNWLKFNHFKSTIKDALIKLNDLVDESDP 316
           +H    +DFV   + ++      K +   +  ++ D +DE  P
Sbjct: 110 LHMLFGIDFVSTLVVSFPHITFLKESGNSSSNEIYDSIDEIPP 152


>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 142 IHRVITERFQRFVLVFLLWSE*KRRVHNGHRGFWF 38
           IH++I++R Q+F   FL W E  + V+  + G +F
Sbjct: 35  IHQLISQRNQKFQANFLEW-ENSKLVYRRYAGLYF 68


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 20/84 (23%), Positives = 35/84 (41%)
 Frame = +2

Query: 20  RENMKIKPESPVSVMDPSLLLRPEEKYEDKPLEAFRDYTVDENDPIKMRVRKTYYDMHTN 199
           R+N+   P  P +   PS  +RP     D P          + D   ++   T  + ++ 
Sbjct: 393 RKNINFTPLPPSTPSKPSTFVRPHSSSTDSPPSPSTPSNT-QTDSYFIQRENTPTNHNSI 451

Query: 200 MTVDFVKGKMDNWLKFNHFKSTIK 271
            T+   K  MD +L+F+   S +K
Sbjct: 452 PTIQLEKSSMD-FLRFDPPPSAVK 474


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +2

Query: 5   HSKWTRENMKIKPESPVSVMDPSLLLRPEEKYEDKPLEAFRDYT 136
           H+    E   + PE P+S+ +   +L  +  YE   +E +  YT
Sbjct: 600 HTNPNAEQGDVIPEKPMSIKERMNMLMTKTDYEKPKVEGYGRYT 643


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/46 (23%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
 Frame = +2

Query: 77  LLRPE-EKYEDKPLEAFRDYTVDENDPIKMRVRKTYYDMHTNMTVD 211
           +++P+ +K++ + LEA  ++  ++++   M + ++  +M TNM +D
Sbjct: 674 VVKPKRKKHKKQRLEAGEEFDSEDDNSDDMDIEESEEEMDTNMVID 719


>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 205

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 123 SVITRWMKTIRSRCESVKPIMICTR 197
           +VIT+W+  + S C  VK +++  +
Sbjct: 102 NVITKWLPEVSSNCPGVKLVLVALK 126


>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 391

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/53 (20%), Positives = 23/53 (43%)
 Frame = +2

Query: 2   NHSKWTRENMKIKPESPVSVMDPSLLLRPEEKYEDKPLEAFRDYTVDENDPIK 160
           N   +  ++ K+ P    + +D    L P  +Y+  P +   DY     +P++
Sbjct: 141 NELDYRPDSQKLSPGKEKNTLDLKHCLLPSPEYKAPPAKKPEDYEASPGEPVE 193


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 233 NWLKFNHFKSTIKDALIKLNDLVDESD 313
           N LKF H  ST+ D  +  +D VD  D
Sbjct: 609 NLLKFVHLVSTVDDLQVVEDDAVDRHD 635


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +2

Query: 197 NMTVDFVKGKMDNWLKFNHFKSTIKDALIKLNDLVDESDPDTNLPNIVHAFQTAERIRE 373
           NM + +VK K D W    HF        I+    VD++    NL  +   +  AE+ R+
Sbjct: 760 NMILRYVKSKADWWTSVAHFNR----ERIRRGATVDKTVAKKNLGRLTRLWLKAEQERQ 814


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 439  GHNLSEIVNESNEVEPIIVRMVLTDPLRCLESVHNVRQVS 320
            G++LSE +N  N +   + ++   DP+R    +H  +  S
Sbjct: 936  GNHLSEKLNSDNHIPKALQKLDSADPIRKPSLLHTSKSYS 975


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -1

Query: 463 APLRLLVEGHNLSEIVNESNEVEPIIVRMVLTDPLRCL--ESVHNV 332
           A LR  V     S ++NE+NE + I+  ++L+  LR L  E+  N+
Sbjct: 666 ARLRRSVSNKEDSSLINEANEEKEIVTNLLLS-ALRALISENAENI 710


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 525 SSPXTIDLPHLHPTANVSPT 466
           S+P T+D+P  HP    SPT
Sbjct: 78  STPPTVDIPFHHPHTIHSPT 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,507,465
Number of Sequences: 5004
Number of extensions: 53829
Number of successful extensions: 163
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)